Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01291 ATGGAGTGGAATACAAAATCTCTCGGGCAATGGGACTGGGAGCACTTGTTCTTCTTGAATACAAAAGCAACCGAAAATCCCAGATTACAACCTATTGATTGGAGTGGTGAGGCAGATCGAGAAATCAATGTTGGGGTGTTGTATCCATCAGGTGGTAGTGGTTGTTCTGGTTCTGAATTGATACATGCTACTTCCTCAAGGTGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGTAAGACATCTATGTTAACCCTGGAAGGTTCTCAAGATGATTCAAGTGGTAAGAAAGAATTGTCCAAAGGAGAGCCAGTTGAAACTTCTACAGCAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGATCATACTTTGAGGATGTTTGTGCAGGAAATGATTCCAGGAAACCATCTTCCTCTGTGGTTCCCATTTCATCTGGAAAGAAATGCAAATCCAATAGTCAGAACTTACAACTTCCAACCTGCCAGGTGGAAGGCTGTGGCCTTGATCTGTCATCTGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCCCCTAAGGTGGTTGTAGCTGGTTTAGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCTGAGTTTGATGATCAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAGCCTCAACCTGAAGCAGTGCAATTAAATCCATCAGCTCTGTCTTCATCACCCTATGATGGGAGGCAAATGATTACTCCATTTGCATTTTCAAGAACTGCTACAAATTTAGCATGGCCAGACACACACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCTGAAGCCTGCAAAAGCCTTCAATAAGATACCAAATATTGTCACTATGCTTTCTGATGATTCCGGTGGTCTTCTTACATCCAAAGGCATAGGAATCAAGAACACTGTTCCAGGTATGGAAGATCGCACTACTACCTCATCTGCTCCAAATGCAACAGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACCAGACTAAGTCCCTTTCTCAAGAACACTCCAACAGGACAACAGGTACCACTCAGTCCATAACACACCCAATGACTCAGCGCTTAGCCTTTCCTTCATCAGAATATTGGCACAGTGATCAACAACTGGGAAACTCCAGCATCTGTATCTCATACTCAGATTGTGATAATAGCAACCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTTTGAGTCAGGTTTTCCTTGCAACCAGCTGGATTAA 1350 0.437 MEWNTKSLGQWDWEHLFFLNTKATENPRLQPIDWSGEADREINVGVLYPSGGSGCSGSELIHATSSRCSKSASNNSSSNGDSKTSMLTLEGSQDDSSGKKELSKGEPVETSTAAEPSSVSGEPLLTLKLGKRSYFEDVCAGNDSRKPSSSVVPISSGKKCKSNSQNLQLPTCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVVVAGLERRFCQQCSRFHALSEFDDQKRSCRRRLSDHNARRRKPQPEAVQLNPSALSSSPYDGRQMITPFAFSRTATNLAWPDTHSSKLPQTKDFLLKPAKAFNKIPNIVTMLSDDSGGLLTSKGIGIKNTVPGMEDRTTTSSAPNATAQDVNRALSLLSTNSWGAYQTKSLSQEHSNRTTGTTQSITHPMTQRLAFPSSEYWHSDQQLGNSSICISYSDCDNSNRFQDFQLLSAPFESGFPCNQLD. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01291 449 MobiDBLite consensus disorder prediction 236 262 - -
Seca5g01291 449 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 386 IPR044817 GO:0003677
Seca5g01291 449 MobiDBLite consensus disorder prediction 67 93 - -
Seca5g01291 449 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Seca5g01291 449 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Seca5g01291 449 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Seca5g01291 449 Pfam SBP domain 172 245 IPR004333 GO:0003677
Seca5g01291 449 MobiDBLite consensus disorder prediction 67 122 - -
Seca5g01291 449 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01291 Seca-Chr5 40205837 40211400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01291 1 408 SBP-box Gene Family AT5G43270 40.187 1.17e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca5g01291 SBP 7.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01291 - - gmx:100781289 686.411