Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01281 ATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGACAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCACATACTCCTGGAGCGGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAAGCTTAGAGACTTTGGTGAAACACCATTGACTATTCCTGGAGTTCCAAACCCTTCTAATGATGTCAAACATGTTTTGGATTGCCTTCAAAAGATTAAAAAGTGGCATCTACACTCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGATAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTCTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAATGCAAAACATTTTCTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATGACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTTTGAAAATCTTCCTGGTTTGCAAATTTATACTCTGGTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAAGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTTTAGAACAATTGTTTGAGGAGTGCTTCAATTGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAATGTGATTGATAATTTTGAGGATCGATATGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTTTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTTTTCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 1758 0.3828 MNASHYEPLSIENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGTIQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRDRKKLRDFGETPLTIPGVPNPSNDVKHVLDCLQKIKKWHLHSSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRIELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPENAKHFLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKMTSGFIDVYESGNFENLPGLQIYTLVMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKFKSDFKVGSKVRFILSLLEQLFEECFNWKKGREILLLYGEQDLFERGNVIDNFEDRYGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFSENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKASTN. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01281 585 Pfam SNF2-related domain 36 354 IPR000330 GO:0005524|GO:0140658
Seca5g01281 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 285 IPR027417 -
Seca5g01281 585 CDD SF2_C_SNF 402 516 - -
Seca5g01281 585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 552 IPR001650 -
Seca5g01281 585 Gene3D - 5 289 IPR038718 -
Seca5g01281 585 Gene3D - 381 581 IPR027417 -
Seca5g01281 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 566 IPR027417 -
Seca5g01281 585 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 584 IPR044567 GO:0080188
Seca5g01281 585 SMART helicmild6 416 505 IPR001650 -
Seca5g01281 585 SMART ultradead3 23 263 IPR014001 -
Seca5g01281 585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca5g01281 585 Pfam Helicase conserved C-terminal domain 423 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01281 Seca-Chr5 39754714 39756537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01281 407 523 RAD5 or RAD16-like Gene Family AT5G05130 38.136 1.20e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01281 SNF2_N 2.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01281 K10875 - gmx:100811703 835.099