Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01279 ATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTCATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCGATTCCCAAATAAAAAGCCTCTGATCCTTGCTCCAAAAACTCCAAACCCCACCGGTGATGTCAAGCATGTTTTGGATTGTCTTGAGAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTCAGAGAAAGCATTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACATACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTTCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGACAAAGCAAAACATTTACTTGAGACACGTGATAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAGTTGAGGATGCAGGGTTTGGACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGATTCCTGGTTTGCAAATTTATACTCTGGTTATGAACCTAACTGATGTGCAGAATGAGCTTTTTCAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCTTTTGGAGGGACAACTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACATCAACAAGTTCGAATAAGTTTTACACTTCATAG 1059 0.373 MNASHYEPLSIENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKRFPNKKPLILAPKTPNPTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKAFRESIGILILDEGHNPRSTRSRLRKELMKVETKLRILLSGTLFQNNFGEYFNILCLARPKFVQEVLKELDTKQKKGNDKIPDKAKHLLETRDRKFFLDDIANKIDSSDDELRMQGLDMLRKITSGFIDVYESGNSEKIPGLQIYTLVMNLTDVQNELFQKLQKKMVGSSVFLLEGQLMVTLGSIHPWLIKTSTSSNKFYTS. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01279 352 Pfam SNF2-related domain 130 315 IPR000330 GO:0005524|GO:0140658
Seca5g01279 352 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 211 IPR014001 -
Seca5g01279 352 Gene3D - 4 99 IPR038718 -
Seca5g01279 352 Gene3D - 102 249 IPR038718 -
Seca5g01279 352 SMART ultradead3 23 223 IPR014001 -
Seca5g01279 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 252 IPR027417 -
Seca5g01279 352 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 105 349 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01279 Seca-Chr5 39737488 39738666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01279 SNF2_N 2.6e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01279 K10875 - gmx:100811703 481.1