Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01276 ATGGAGTTTTGTAGTGAAGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATAATATAAAACATGATGTGAAAGTCAATACTATAATGCGTCAGTTGGTTTGCAACAGAGAGGGTTTTAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCATTCGTACTAGGTTTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAATCTTGTCCTTTGTGGAGACTCATAATCATGATTTATGTCCACCAAAATATAAACACTCAATCCCTGCATTTCACAAGATGGGTGATACAGATAAATCTCAAGCGGACAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGCATATATGTTGGCTCAAAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGGGAAAAACCGTGAGAAGATGAAAGATGGGGATGTATGCATTGCATTAGGTTATTTACAAGGAAAGGAAAATAGTAATGGATTGGTGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTTTGGGTAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAACAAGTACAACAAACCTCTAG 717 0.3515 MEFCSEEHACKFYDSYARCHGFVARKDNIKHDVKVNTIMRQLVCNREGFRNKKHFIRLDRKRPHRPIIRTRFQAKLRVHFDYKRSKWTILSFVETHNHDLCPPKYKHSIPAFHKMGDTDKSQADSLHSYGVRTCHIMAYMLAQKGGYSALGFTKKDMYNYFSGKNREKMKDGDVCIALGYLQGKENSNGLVHSSYSFTSDGKLKNLFWVDEVSRSDFQCFGDVLAFDTTYKKTSTTNL. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01276 238 PANTHER OS01G0519700 PROTEIN 1 228 - -
Seca5g01276 238 Pfam FAR1 DNA-binding domain 11 101 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01276 Seca-Chr5 39667414 39668130 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g01276 FAR1 4.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01276 - - ccaj:109792835 299.671