Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01270 ATGGCGGAGGAAGAAGAGAACGTATCGTCCAGATCCGAATTTCCGAGGGGTCGGGTGAAGAAGATAATGACTCTGGACAAGGACGTGCAGAGGGTAAGCTCAGAAGCGTTGTTTCTGGTGTCGCGCTCCACGGAGCTTTTCCTCCAATTACTGGCTAAAAAGTCTGCGGAGGTTGCCATTGAGAAGAAACGCAAGACCGTGAAGCTTGAACACATAAGAACCGCCGTGAAAAAGCACCAGCCAACCAGGGATTTCCTCCTCGATTCGCTTCCAATGCCTTCTCAGCCAGCCAAACCTGATAAGCCCGCTCCGGCTGCGGATCGGGTCAAACCTGCTCCGGCTGGTACTCGCCGCATCGATCACTTCTTCCGAAAGCCAGAAGCCCAAGCCCAAGAGCAAGCCCAAGACCAAGACGAAGCGCCCGTGCCTATGGATGAGTCTTAG 444 0.5428 MAEEEENVSSRSEFPRGRVKKIMTLDKDVQRVSSEALFLVSRSTELFLQLLAKKSAEVAIEKKRKTVKLEHIRTAVKKHQPTRDFLLDSLPMPSQPAKPDKPAPAADRVKPAPAGTRRIDHFFRKPEAQAQEQAQDQDEAPVPMDES. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01270 147 FunFam Nuclear factor Y, subunit C13 1 91 - -
Seca5g01270 147 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 131 - -
Seca5g01270 147 MobiDBLite consensus disorder prediction 82 147 - -
Seca5g01270 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Seca5g01270 147 SUPERFAMILY Histone-fold 10 94 IPR009072 GO:0046982
Seca5g01270 147 MobiDBLite consensus disorder prediction 113 127 - -
Seca5g01270 147 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01270 Seca-Chr5 39458387 39459728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01270 4 130 CCAAT-HAP5 Transcription Factor Family AT5G43250 61.719 2.74e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca5g01270 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01270 - - ccaj:109814845 191.815