Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01261 ATGTTTTGTGTTTCACCAAGACAAAGTAGCACAATGGAGCAGCCACAGCTCTTAGTGGATGAAAACTTCCCTCTCTTCAAATCAACCCGCAAACCCTCAAAAAACCCCTCACCCTCCGCCGTCAACAACAATCCTAACTCCGATGCCAAACACTCAGAAGCCACCGTCAATAAAACCCCTAATTTTGATGCCGAAAACTTCAAAGACACTGCCCCAGCCACGACGTTCGCTGATCTTGGACTGGCAGAATGGGCGGTGCAGACATGCAAGGCGCTCAGAATGCAGGTGCCGCGGCGCGTGCAGTGGCAGTGCATCCCAAGGGTCCTGGAGGGCCGCCACGTACTCGGCATCGACGAGACTGGCAGCGGAAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTCGCCCTTGTGGTGACTCCCACACGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCCGCCTCCGCATTGCCGTGGTGGTTGGCGGGATGGACATGCTCAAACAGGCCCAGGACTTGATCGACAGGCCTCACATTGTCATCGCCACCCCCGGGAGAATCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTTGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCTGTAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACACATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACTCAGGTTCAGAGGCTCGAGGCACTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGGAATTATATTCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTCGTCACCCAGCTTGGCTCCCACATCAGCATTAACAGTGACAAAAGGTCTTTAATTCGCCAATGCAGGCATTGTGTTAAGGATCCCTATCTCAAATGGACAATAAGAATGATGTTGATCTCATTCATGAAATAG 1395 0.4789 MFCVSPRQSSTMEQPQLLVDENFPLFKSTRKPSKNPSPSAVNNNPNSDAKHSEATVNKTPNFDAENFKDTAPATTFADLGLAEWAVQTCKALRMQVPRRVQWQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIAVVVGGMDMLKQAQDLIDRPHIVIATPGRIKLLLEDNPDIPPIFSRIKFVVLDEADQVLDVDFQEELKFIFQCLPVNRQNLFFSATTTHNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMGIRSAIVFTNTRRDCHRLSLMLEVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQLGSHISINSDKRSLIRQCRHCVKDPYLKWTIRMMLISFMK. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01261 464 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 64 427 - -
Seca5g01261 464 Pfam Helicase conserved C-terminal domain 306 413 IPR001650 -
Seca5g01261 464 MobiDBLite consensus disorder prediction 1 17 - -
Seca5g01261 464 MobiDBLite consensus disorder prediction 1 54 - -
Seca5g01261 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 424 IPR027417 -
Seca5g01261 464 Gene3D - 278 449 IPR027417 -
Seca5g01261 464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 463 IPR001650 -
Seca5g01261 464 CDD SF2_C_DEAD 290 422 - -
Seca5g01261 464 SMART helicmild6 332 413 IPR001650 -
Seca5g01261 464 CDD DEADc_DDX49 76 279 - -
Seca5g01261 464 SMART ultradead3 93 293 IPR014001 -
Seca5g01261 464 MobiDBLite consensus disorder prediction 28 54 - -
Seca5g01261 464 Gene3D - 40 277 IPR027417 -
Seca5g01261 464 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 278 IPR014001 -
Seca5g01261 464 Pfam DEAD/DEAH box helicase 99 267 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01261 Seca-Chr5 39385268 39390201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01261 48 424 Eukaryotic Initiation Factors Gene Family AT3G13920 31.510 5.65e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01261 K14778 - gmx:100804060 599.356