Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01253 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAGAACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTTTTATTGCCTTTCTTGTTAGGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGAAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAACCCTAGAAGCACCAAGTTAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGATAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAAAATAATTTTGGTGAATACTTCAACACACTTTGTTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCATAG 483 0.3602 MHDHQKKGFQFIWQNIAGSIQPELMEVESERRGGCVISHTPGAGKTFLFIAFLVRGYTSFLSLTRENSKYEHKKYMAKALRKSTGILILDEGHNPRSTKLRLRKGLMKVEIELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNP. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01253 160 Pfam SNF2-related domain 60 143 IPR000330 GO:0005524|GO:0140658
Seca5g01253 160 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 54 IPR044567 GO:0080188
Seca5g01253 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca5g01253 160 Gene3D - 56 159 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01253 Seca-Chr5 39249570 39250310 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01253 SNF2_N 7.4e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01253 K10875 - rcu:8272097 164.851