Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01251 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACGAGAACTTATGGAAGTAGATCCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGTCTTTCTTGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGAATAGCACTGGGATCCTTATACTCGATGAAGGGCACAACCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAAAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAATATCCAGAGAAAGCAACACATTTACTTGAGACACGTGCTAGGAAATTCTTCTTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAGTTTATACTCTGCTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGTTGGGTCCAGCATGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGTTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAAGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTGCAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATTGTTGAGAAGGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAATCTTCAAAAAACTAA 1488 0.3871 MHDHQKKGFQFIWQNIAGSIQRELMEVDPERRGGCVISHTPGAGKTFLVIVFLVMGYTSFLSLTRENSKYEHKKYMAKALRNSTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKYPEKATHLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQVYTLLMNLTDVQNELLQKLQKKMVGSSMFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKDGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENPSQWQAEKIEDDILREIVEKDESKAIHMIMKNEKSSKN. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01251 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 462 IPR001650 -
Seca5g01251 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 479 IPR027417 -
Seca5g01251 495 SMART helicmild6 326 415 IPR001650 -
Seca5g01251 495 Pfam SNF2-related domain 59 243 IPR000330 GO:0005524|GO:0140658
Seca5g01251 495 CDD SF2_C_SNF 290 426 - -
Seca5g01251 495 Gene3D - 56 177 IPR038718 -
Seca5g01251 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca5g01251 495 Gene3D - 218 495 IPR027417 -
Seca5g01251 495 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 54 IPR044567 GO:0080188
Seca5g01251 495 Pfam Helicase conserved C-terminal domain 298 414 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01251 Seca-Chr5 39205737 39207482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01251 344 433 RAD5 or RAD16-like Gene Family AT5G05130 41.758 1.75e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01251 SNF2_N 1.3e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01251 K10875 - gmx:100811703 643.269