Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01250 ATGATCCTTGCTCCAAAAACTACTCTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTATATCTAATTCATGGTCATAAAGACATGAGAGACTTTGATGAAACACCATTGACTACTGCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTTCACCCTAGTATTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGTCTAAAGCTTTGAGGAAAAGCACCGGGATCCTTATACTCGATGAAGGGCACAACCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCTGGTACATTGTTTCAAAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAATATCCAGAGAAAGCAACACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAAGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAGTTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAACAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGTTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAAGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTGCAGTTGTTTGAGAAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCACAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATATTAAGGGAAATTGTTGAGAAGGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAATCTTCAAAAAACTAA 1551 0.3862 MILAPKTTLYTWYKEFIKWEIPIPVYLIHGHKDMRDFDETPLTTAGVPNPTSDVKHVLDCLEKIKKWHLHPSILVMGYTSFLSLTRENSKYEHKKYMSKALRKSTGILILDEGHNPRSTKSRLRKGLMKVETKLRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKYPEKATHLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLKKITSGFIDVYESGNSDKLPGLQVYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTTTSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKEEKVLIFCRNLAPMKLLVQLFEKCFKWKKDGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYHRTTWKEWVSNMIFSEDFVENPSQWQAEKIEDDILREIVEKDESKAIHMIMKNEKSSKN. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01250 516 SMART helicmild6 347 436 IPR001650 -
Seca5g01250 516 Gene3D - 239 516 IPR027417 -
Seca5g01250 516 Gene3D - 1 198 IPR038718 -
Seca5g01250 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 160 IPR014001 -
Seca5g01250 516 Pfam SNF2-related domain 1 262 IPR000330 GO:0005524|GO:0140658
Seca5g01250 516 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 514 IPR044567 GO:0080188
Seca5g01250 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 162 IPR027417 -
Seca5g01250 516 CDD SF2_C_SNF 311 447 - -
Seca5g01250 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 500 IPR027417 -
Seca5g01250 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 487 IPR001650 -
Seca5g01250 516 Pfam Helicase conserved C-terminal domain 319 435 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01250 Seca-Chr5 39184578 39186128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01250 365 471 RAD5 or RAD16-like Gene Family AT5G05130 37.963 1.57e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01250 SNF2_N 8e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01250 K10875 - gmx:100811703 753.051