Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01244 ATGGATGTTGCTGAGGTTGAAGAAAATTTGTTTGCAGCCAGTGATGCAAAGTTACATGGAGAAATGTGCAAGGGTCTTTCTGCAATATATTGCAAAATATTGTCTATATTTCCCTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCAAAGAATGTTCTTCAACACTGCTCAGAGTGTAGCAAACTTTACTTGGCTATAACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTATAGATAGTCTTAAGTTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTCAATGAACTTGCTAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCCAATGACAATAATGAACTTGAGTGTTTTCATCTAGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGAGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTTCACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCATAGACCTCTTGAGGACTTTGTTCCTGGTGGTCATTGTCAGGCCTTCGATAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAGGAGATCAGGGCAGATGCCCCTTCCACCTGAAGAGTTGAGGTGTCCGATATCTCTGCAGCTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGTTATGTATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGATCATCTTAGTTTGACTCCTAATTACAGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTCAACTACTGGAGATTGGCATTATCGGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTAAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGTATCTCAGAGCAAACAGGGGGGAATGCAGCTGAAAGTTTGTCAGCACAAGAGGAAGACAATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGTGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACGGTTAAGGCTGCTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGTGATGGCCCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAGTTTTATCCTTGTTGGAGGAAATGATTTCAGACACAAGTTCATATGGTTGTGCAACTGCCCTGTATCTGAACCTTTCTTGCCTTGAAGAAGCCAAGCAGATCATTGGCACGAGTCCTCAGGCTGTCCAGTTCCTCATCCAGATTCTTCAAGCTAAAACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCCCTCTATAATCTTTCTACTGTGCCCCCCAATATTCCAAACCTCCTTTCATGTGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCATGTGGATAGAAAAATGCATAGCTGTTTTGATAAATTTGGCTGTTTCCCAAGTGGGAAGAGAGGAAATTATGTTGACTCCTGGACTCATAGGCACATTGGCTTCGATACTGGACACCGGTGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTATGTAACAGGAGTGAGAAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTAAATGGAACATCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCCGGGAGCAGCGACAGCGAGAACGGGACCAATCACCGGCTAAGACAATTCAATGCCAGCCTGAAACTAGTGATTTGTCCAAGCCTCCTCCTGAAACAAAACCTCTATGTAAAACAACATCTAGAAAAAAGGTGGGAAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2304 0.4197 MDVAEVEENLFAASDAKLHGEMCKGLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALIDSLKLVEDIVPQSIGCQIDEIVNELASTVFALDPSEKQVGDDLIALLQQGRKFNDSNDNNELECFHLAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLFHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVHRPLEDFVPGGHCQAFDRQLSKLSSFNFKPNNRRSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERLCIEKWFSDGHNTCPKTQQKLDHLSLTPNYSVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPLEESGISEQTGGNAAESLSAQEEDNEQYFSFLKVLTEVNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALMQFLQSAVREGNVMAQESGAMALFNLAVNNNRNKEIMISAGVLSLLEEMISDTSSYGCATALYLNLSCLEEAKQIIGTSPQAVQFLIQILQAKTEVQCKLDSLHALYNLSTVPPNIPNLLSCGIINGLQSLLVGQDDCMWIEKCIAVLINLAVSQVGREEIMLTPGLIGTLASILDTGELLEQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRERDQSPAKTIQCQPETSDLSKPPPETKPLCKTTSRKKVGKAFSFLWKSKSYSVYQC. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01244 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Seca5g01244 767 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Seca5g01244 767 PANTHER U BOX DOMAIN-CONTAINING 23 710 - -
Seca5g01244 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Seca5g01244 767 MobiDBLite consensus disorder prediction 717 731 - -
Seca5g01244 767 FunFam RING-type E3 ubiquitin transferase 395 717 - -
Seca5g01244 767 CDD RING-Ubox_PUB 280 332 IPR045210 -
Seca5g01244 767 SUPERFAMILY RING/U-box 277 354 - -
Seca5g01244 767 MobiDBLite consensus disorder prediction 708 743 - -
Seca5g01244 767 Coils Coil 175 195 - -
Seca5g01244 767 Gene3D - 531 706 IPR011989 -
Seca5g01244 767 Gene3D - 426 530 IPR011989 -
Seca5g01244 767 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Seca5g01244 767 SMART arm_5 500 538 IPR000225 GO:0005515
Seca5g01244 767 SMART arm_5 539 581 IPR000225 GO:0005515
Seca5g01244 767 SMART arm_5 454 498 IPR000225 GO:0005515
Seca5g01244 767 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Seca5g01244 767 Coils Coil 695 715 - -
Seca5g01244 767 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Seca5g01244 767 SUPERFAMILY ARM repeat 425 708 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01244 Seca-Chr5 39015553 39021122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01244 1 766 U-box Gene Family AT1G24330 66.881 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01244 - - gmx:100804344 1295.03