Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01241 ATGATGATGTTGGTGAATTCTGGCACGGGGCTTAAGAAACAGGTTTTTCCCATTAGCTACGAAACGGAAATGTCACAGCGTCTCGTAGAAGCTTCTCATCGCGGTGACACAGAAACTGCCTTTGAATGTCTCGCGAGTCCCTTGGTGGACGTGAACTTCGTCGGAACGGTGTCGTTGAAGTCCAAAACGATGGAGATCGTGCTGCAAGACGAGTCACCTCACCGAGTTCAATCGGTGTATGAGGAGTTCAAGACAGAGGTCACTGCTCTGTTCTTGGCTGCGCATTCTGGGAATTTGACACTCCTTCGGAAGCTACTGGTAAATGTCGGAGCTAATGTAAATATGAGATTGTTCCGGGGATATGCCATAACAGCAGCAGTGAGGGAAGGTCATCTAAAAATATTGGAGGTCCTTATCAATTCTGGGGCATCACAACTTGCATGCGAGGAGGCTTTAATGGAAGCAAGCTATGTGGGACGGGCCAGATTTGCTGAACTACTCATGCGGTCCAACATGATCCGTCCTCAGGTTGCAATTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTTATTGAGGTTGTTGATGTACTCCTCAAGTATGGAGTGGATGCCAATGCAATTGATAGGACGCTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTCGCTGCTGTTGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGTGTGAGAGTAGATATCAAGGTCAATCTAGGGGCTTGGTCATGGGAGACAGATACAGGAGAAGAATTTCGTGTGGGTGTTGGACTAGCTGAGGCTTATCCAATCACCTGGTGTGCTGTGGAGTATTTTGAATCCAGTGGTGCTATATTGCATATGCTGCTTTGCCACCTCCCGCCTAATACTTTGCACATTGGGAGGACTCTCTTGCACCATGCCATCGTTTGTAACAATGAAAAAGCATTAAATATACTTTTAAATAGTGGTGCAGATGCGGAAGCGGTAGTACAAACTACTGAAGAAACCAATGTACACCCTATTCACATGGCTGCAAGGCTTGGATCATGCAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAGCTTGGACTCCCAAACAAAATCTGGAGATACAGCATTGATGATCTGCACAAGGTATAAACATGAGAGGTGCCTTAGAGTCCTAGTATCAGCAGGTGCAGATTTGGGGTTGGTAAATTCATCTGGTCATTGTGCAACTTCAATCTCAAACTCTGTTCAGTGGACTAAAGTATTCCAGACAGCAATTTTAGATGCAATAAGAGCCGGAAAGGAAGTTAAATCAAGCAATGCCTCTAGATTTTCTGCTTTGTTATTTGTGACTCGTGCAAATGACACAGAGGGATTGAAGAAACTCATTGAAAACAAGAACATAAATCTTGATGAGCAAAATGGCAATGGATTTTCAGCTGCTATGATTGCTGTGGCAGGGGGTAACATGGAGACTTTCAGGTTGCTTCTCTATGCTGGGGCTGATGTAACCAAGCTTAAAAACAAGTATGGTTTGACAGCCCTTAACCTCATAGACGCCAGCCAAAATGGGGAAGCATTTTACAAGGTAATGCTTGAATATGCACTTAACAACGGATGCGATGGTTCAATCGAGGTGAACCCTCTCCACCGTGCAACTCGCTATGGGGACATGGACATTGTTCATAAATTATTGAAAGAAGGGTATGATGTCAATGCTTTTGATGGAGATGGATATACCCCATTGATGTTAGCAGCAAGAGGATGCCTTGGTGAAATGTGTGAGCTTTTGATCTCATGTGGAGCCAAATGTGATATTCAGAATGAGAGACATGAGACAGCACTTTCACTTGCCAGAGAAAATGGTACAGGAAATTATGCAGAGCGTGTGATATTGGATGAGCTAGCTCGAAGAGTAGTCTTGTGTGCGGCTTGTGTAAAGAAACATACCAAGTGTGGTAAAGGGTCACCTCACAGTAAGCAACTGGTAATGGTGGGGGCTGCTGGAATTTTACGTTGGGGAAAATCAGATAAGAGAAACGTGGTTTGCAAAGAAGCTGAGGTTGGACCAAGTGCAAAATTTCGATGGAATCGCCGGAAGAAGTTTGATGTTGATGAGCCAGGAATGTTTCATGTAGTCACTACAAAAAATAAGCAGGTGCATTTTGTATGTGAGGGTGGGGTTGAAATGGCTGAGTTGTGGGTAAGGGGTATTAAATTAGTAACAAGAGAAGCCATTTTTGGCCAAAGAGCTGATAACGTCTGA 2289 0.4421 MMMLVNSGTGLKKQVFPISYETEMSQRLVEASHRGDTETAFECLASPLVDVNFVGTVSLKSKTMEIVLQDESPHRVQSVYEEFKTEVTALFLAAHSGNLTLLRKLLVNVGANVNMRLFRGYAITAAVREGHLKILEVLINSGASQLACEEALMEASYVGRARFAELLMRSNMIRPQVAIHALVSACCRGFIEVVDVLLKYGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRVDIKVNLGAWSWETDTGEEFRVGVGLAEAYPITWCAVEYFESSGAILHMLLCHLPPNTLHIGRTLLHHAIVCNNEKALNILLNSGADAEAVVQTTEETNVHPIHMAARLGSCNILQCLINGGCSLDSQTKSGDTALMICTRYKHERCLRVLVSAGADLGLVNSSGHCATSISNSVQWTKVFQTAILDAIRAGKEVKSSNASRFSALLFVTRANDTEGLKKLIENKNINLDEQNGNGFSAAMIAVAGGNMETFRLLLYAGADVTKLKNKYGLTALNLIDASQNGEAFYKVMLEYALNNGCDGSIEVNPLHRATRYGDMDIVHKLLKEGYDVNAFDGDGYTPLMLAARGCLGEMCELLISCGAKCDIQNERHETALSLARENGTGNYAERVILDELARRVVLCAACVKKHTKCGKGSPHSKQLVMVGAAGILRWGKSDKRNVVCKEAEVGPSAKFRWNRRKKFDVDEPGMFHVVTTKNKQVHFVCEGGVEMAELWVRGIKLVTREAIFGQRADNV. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 347 379 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 85 118 IPR002110 GO:0005515
Seca5g01241 762 SUPERFAMILY Ankyrin repeat 311 638 IPR036770 -
Seca5g01241 762 Gene3D - 17 178 IPR036770 -
Seca5g01241 762 Pfam Ankyrin repeats (3 copies) 350 409 IPR002110 GO:0005515
Seca5g01241 762 Pfam Ankyrin repeats (3 copies) 526 616 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 310 342 IPR002110 GO:0005515
Seca5g01241 762 Gene3D - 432 539 IPR036770 -
Seca5g01241 762 Gene3D - 540 645 IPR036770 -
Seca5g01241 762 PANTHER ANKYRIN REPEAT-CONTAINING 21 743 - -
Seca5g01241 762 Gene3D - 179 263 IPR036770 -
Seca5g01241 762 ProSiteProfiles Ankyrin repeat region circular profile. 310 339 - -
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat region circular profile. 484 511 - -
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Seca5g01241 762 Gene3D - 302 431 IPR036770 -
Seca5g01241 762 ProSiteProfiles Ankyrin repeat region circular profile. 585 617 - -
Seca5g01241 762 ProSiteProfiles Ankyrin repeat region circular profile. 85 116 - -
Seca5g01241 762 SMART ANK_2a 484 513 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 177 206 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 118 147 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 223 252 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 380 409 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 347 376 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 450 478 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 585 614 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 85 115 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 552 581 IPR002110 GO:0005515
Seca5g01241 762 SMART ANK_2a 310 339 IPR002110 GO:0005515
Seca5g01241 762 ProSiteProfiles Ankyrin repeat profile. 380 412 IPR002110 GO:0005515
Seca5g01241 762 SUPERFAMILY Ankyrin repeat 46 257 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01241 Seca-Chr5 38964077 38969849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01241 354 533 Ion Channels AT2G25600 29.348 3.29e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01241 - - gmx:100795638 1311.21