Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01236 ATGTGTCAAAGTCGAAACCGATACAATCTAGTGTTTTTTTGTTTATCTATCTCCATGCACACTGCAACTCCGCCGCGCACTCCCTCCCTAAACGACGACGTGTATCGTCTTGAGCTTCCTCTTCAGCACTGCAACACTCTCTCGCCAACGCCAAGTTCAGTTCCAACATTTGTGAGCGCAATGAGAAGACCGAAATCGAAGGACTTTAAGAAGCAACACCGAGCCTCAGAAGAAGAGGAGATAAAGCTCTTGGATGCATGGATTCAAAGCCAGAAACCAGACTCTGGTTCGAACCCAATATCTCTTCCTCCTCTCCCCAAAAACTCCCCCATTGGGCGTCTCGACGATGACACCTTCTCGCGCTACCCTGGTGTCAAGAGCTTCGTCCACTTACCCCTCTCCAAGAGAACCAAAGATGGCTTGCGAGAAGCCAAGTTCGTTTCTATGACCGACATACAGAGAGCTTCTCTTCCCCACGCGCTTTGTGGCCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCACCTACAAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAACTCAACATATTGATTTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCTAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGACGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCTAAGCGCAGACAAACCTTGCTTTTCTCAGCAACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCTGAGTATCTGAGCGTGCATGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAGATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAACACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAACGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTATATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTGCTGCCCTCAGAAATTCAAATGCTTGAAAGATTAAAAGCAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTTTGTTGGCATCTTTACTTGTCAAGTACCCAGACCTGCAGCATCGGGCTCAAAGGGCGTTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTTATGAAGCTACCTATTGATGAGTATTCAGCATCATTAGGTTTGCCAATGACTCCCAAAATCCGTTTTCTCAACCAGAAAATTAAATCTAAAGCTGTGTCAACAGAATCAGTTTTAGTTGAACCAGAGGTTCCAAACAAGGAAAATGTCGCGGAGGTTTCAAGAAAGAAGCTAGACTCTGTTGTTTTCAAAGATGAGGAAACTGAAAACGATCTTCTTCAGGAAGCTGATACCTCAAATGAAGGCGAAATGAAGTCATCTGATATTGGAGAAATAATGTATGTTCCCATATGTGTTTTCAGTAGTATAGGGCCAGCAACTCGGTTGTTGAAGAAGAAGAAGCTCAAGATTAATGTACATAGACCATTGGGGACTCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCTAGGATTGCTGACACACAAAGTGGCAAGGAAATGTTGCTACTTGACCCAGAACAAAAAGCTGAATACTACAAAAGGATACAAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTGTAGAGCGCCAGCGTCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGGCAGGGAATGTTGGAGAAGAGGATGACCAAGTTGATACTTCTGGGTCAGAAGGTGACGAAACTGTAAATAGACGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGATGGGGGTGAAAGAAATGAAGTCACACGGAATGCAGAAATTAGTGCTGGCTCCATTACTTTAGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2457 0.4335 MCQSRNRYNLVFFCLSISMHTATPPRTPSLNDDVYRLELPLQHCNTLSPTPSSVPTFVSAMRRPKSKDFKKQHRASEEEEIKLLDAWIQSQKPDSGSNPISLPPLPKNSPIGRLDDDTFSRYPGVKSFVHLPLSKRTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKAAKVPVHFNKPRKELLQPVSGLLASLLVKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTESVLVEPEVPNKENVAEVSRKKLDSVVFKDEETENDLLQEADTSNEGEMKSSDIGEIMYVPICVFSSIGPATRLLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKEMLLLDPEQKAEYYKRIQEDLKKADKEDKLVERQRRREKRIKQKMKWKAGNVGEEDDQVDTSGSEGDETVNRRHKKSKVYFDSDSDGGERNEVTRNAEISAGSITLEEQEALALKLLNSMHS. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01236 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 488 IPR027417 -
Seca5g01236 818 CDD SF2_C_DEAD 346 477 - -
Seca5g01236 818 MobiDBLite consensus disorder prediction 762 789 - -
Seca5g01236 818 Pfam DEAD/DEAH box helicase 150 320 IPR011545 GO:0003676|GO:0005524
Seca5g01236 818 Pfam Helicase conserved C-terminal domain 358 467 IPR001650 -
Seca5g01236 818 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Seca5g01236 818 SMART ultradead3 145 349 IPR014001 -
Seca5g01236 818 Gene3D - 115 338 IPR027417 -
Seca5g01236 818 PANTHER RNA HELICASE 84 611 - -
Seca5g01236 818 SMART DUF4217_3 507 570 IPR025313 -
Seca5g01236 818 SMART helicmild6 385 468 IPR001650 -
Seca5g01236 818 CDD DEADc_DDX10 137 335 - -
Seca5g01236 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 516 IPR001650 -
Seca5g01236 818 MobiDBLite consensus disorder prediction 729 798 - -
Seca5g01236 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 332 IPR014001 -
Seca5g01236 818 Gene3D - 343 588 IPR027417 -
Seca5g01236 818 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Seca5g01236 818 Coils Coil 710 730 - -
Seca5g01236 818 Pfam Domain of unknown function (DUF4217) 512 568 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01236 Seca-Chr5 38903462 38908796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01236 114 485 Eukaryotic Initiation Factors Gene Family AT3G19760 28.534 1.29e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01236 K14776 - gmx:100792106 1291.17