Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01235 ATGGCGGCTGGTAGACATGGAGGTTATCGCGACAATGAGTTTAGGGACCGTGAGTCCAATTTCAATGTTTCAAGGCGGGTTTTTAACAATAATTCTAAAGAAGAGTATGGTATGATTAGTAATGGTAGCCACGATATTGCGAGGAGTGGGAGCAGGGATGCAAGAGATAGGATTAGACAGAGACACAGAGATATTAGGGAGAGAGAAGCTTCGAATGGCAGTTACCGATCTTCTTCGAGCAGGAGCGACTCCGGCGGTAGCAGTAGCAGCGACGGTAGTCGTAATGGCAAGCTTGGTCCCAGAAAGTGTGGGTTTTCTATCAAGACTGTGGATAGAGAGCCAGGTGAACTTTCTAGTGAGAGTGGCTCTGATGATGGTGTTGAATCAGAATCATTGATGAAAGTAAACGGGACTCTATCTTCGGTAGACAGGAAAAGAAAATTTTCACCAATAGTGTGGCATCAGGATGACAAAGAAGTGAATAATTTATCAAAACTTAGGGTTGCCGCAACAGTGACTGCTCTTCCTCCTCCACCTCCACTTCCAAAGGCATTGGGCAAGTCACCTAATGTTCCTTGCAATGGATTTAAAGTTCATCCTGTCAAAAGCAGAGAAGCTGGGAATCTTAAGGAGCCGACTGCAGCTAGTCCTTCTTTGCTGCGTGAGTCAGCTCAGGATGCTGAATCTGAGTCTCCTGTAGGTTTGAATTCATTGTTTCCAGAGCAGAGGTGGGGTAATGAGCAGGAAGCTGAGCAACCAGAAGATGAAGATTATGTTCCAACTCATAACATATCATCTTCAAGATGGGCGGCTGGAGATGACTCTCCTAGTGATGAAGGTGAAATCAATGCTGACAAGGAAATCCTTAAAAGGAGGAGGAGACCATCTCCTGAGCTGGGTATGAGAGCGAGAGCCAAATCATCTGAATCGGAAGAAAGAGCTAGCCTAGGGAGATCATCCAGTGGAGATGATCATCCAGGTATTGAGTCAGAGAAGGATGACTATATGGAGATTGATGGTCAATGTTGCAAAAGTGATACTAGTGGTAATCCCTCATATACAAATTCTGAAGATGAAGATGATAGCAGTGAAACTCCAGAACCTCCAGCTCCGCCACACAGAGTTGTCAACATGCTTCAGGGCTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATAGATGAAGGAACATATGGTGTTGTATACAGGGCCAGAGATAAGAAGACTGGTGAAATTGTGGCATTGAAAAAGGTAAAGATGGAGAAGGAGAAAGAAGGCTTTCCACTGACATCTCTTAGGGAAATAAACATACTTCTTTCATTTCACCACCCATCTGTAGTTGATGTTAAGGAAGTAGTGGTAGGGAGTAACCTTGATAGTATTTTCATGGTTATGGAATACATGGAACACGATCTTAAAGGACTAATGGAGTCAATGAAGCAGCCATTTAGCCAAAGTGAAGTAAAATGCTTAATGCTTCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCACAGGGATTTGAAGACTTCAAACCTTCTTCTGAATAATAGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGTCCATTGAAACCATATACACAATTGGTGGTTACTCTATGGTACAGGGCTCCTGAACTTCTTCTAGGGACAAAACAGTATTCAACAGCTATTGACATGTGGTCGCTTGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTATTTAATGGGAAAACTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGCTTTCAACTCTGGGTGGTTCTGGTCTGGCTATCTGGCCTCCTTGGTGACTTACTTTTACTCGACTTTTCTAGTCTGTATTAACCAGCAGAATGTTCCTTTCAGGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGCTAAACAAGCTTCTTACTTATGACCCTGAAAAGAGGATCACAGCTGAAGATGCTCTCAATCATGAGTGGTTTCGTGAAGTTCCCCTTCCCAAGTCTAAAGAATTCATGCCCACATTCCCTGCTCAACATGCTCAAGACAGGCGGATGCGGAGAATATTGAAGAGTCCACATCCATTAGAGGAGCAAGTCCAGAAGGAGTTGCAGCAGGGTGAACCAGGGGCTGGTGGTATTTTTGGTTAA 2289 0.4329 MAAGRHGGYRDNEFRDRESNFNVSRRVFNNNSKEEYGMISNGSHDIARSGSRDARDRIRQRHRDIREREASNGSYRSSSSRSDSGGSSSSDGSRNGKLGPRKCGFSIKTVDREPGELSSESGSDDGVESESLMKVNGTLSSVDRKRKFSPIVWHQDDKEVNNLSKLRVAATVTALPPPPPLPKALGKSPNVPCNGFKVHPVKSREAGNLKEPTAASPSLLRESAQDAESESPVGLNSLFPEQRWGNEQEAEQPEDEDYVPTHNISSSRWAAGDDSPSDEGEINADKEILKRRRRPSPELGMRARAKSSESEERASLGRSSSGDDHPGIESEKDDYMEIDGQCCKSDTSGNPSYTNSEDEDDSSETPEPPAPPHRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTQLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSELPRVKAFNSGWFWSGYLASLVTYFYSTFLVCINQQNVPFRYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEDALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILKSPHPLEEQVQKELQQGEPGAGGIFG. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01235 762 FunFam cyclin-dependent kinase G-2 isoform X1 373 470 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 8 22 - -
Seca5g01235 762 PANTHER CELL DIVISION PROTEIN KINASE 386 713 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 23 38 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 48 71 - -
Seca5g01235 762 SMART serkin_6 388 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01235 762 MobiDBLite consensus disorder prediction 1 149 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 218 236 - -
Seca5g01235 762 FunFam Cyclin-dependent kinase G-2 471 738 - -
Seca5g01235 762 Pfam Protein kinase domain 388 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01235 762 MobiDBLite consensus disorder prediction 279 340 - -
Seca5g01235 762 ProSiteProfiles Protein kinase domain profile. 388 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g01235 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Seca5g01235 762 Gene3D Phosphorylase Kinase; domain 1 373 470 - -
Seca5g01235 762 Gene3D Transferase(Phosphotransferase) domain 1 471 739 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 175 373 - -
Seca5g01235 762 MobiDBLite consensus disorder prediction 72 95 - -
Seca5g01235 762 SUPERFAMILY Protein kinase-like (PK-like) 380 713 IPR011009 -
Seca5g01235 762 CDD STKc_CDC2L1 382 707 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01235 Seca-Chr5 38894315 38897722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01235 379 734 Core Cell Cycle Gene Families AT5G10270 42.857 8.16e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca5g01235 Pkinase 6.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01235 K08818 - gmx:100793729 1018.45