Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01227 ATGAAAGAGGAAATCAAGTCAGAGTTCAGAAAAAGCGGGTTTGATCTTGATGAAGAAGAAGAAATACTGAATAAATGTCTCACTTTCTGCATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAAGTTTATTACCTGAATAGACTACTGAACGGATCGACCGTACAAAATGCTGAAATGGATGGCTTTCTGCTGCATCTACAAAATAATAAGAAAGAAGATGTTATAATGGAGGAAGCTGGTTTGCATACTTACTCTATCAGAGATGCAGAAATGCTCTTAAGTAATGATGATGAAACAAGGGACAATGCACCTGGAACTCCAACGGATCATCATCAAGATATTTATTCACCTGCACATGATACAACACCTTTAATGTACGGGAATGTTTTATCTTCTGGAAAACCATCAAAACTAGTAACACCCTTTTCAAAGCGGACAGATAGGTTTGCAGTGAAATTTAGCATCAACACCATGCCTGATGTAGAGAATGGAATGCAAGAACCTAATCATGAGAATGTTGAGAATGACGAGGATGATGTTATCAAGAAAGTTCTACCCCGTAAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCAAACAAGGTTGCAGATTTATGTATGATAGGACAGAGGATAGGCTTAATGCAATAGAAAACCGAATTAAAAAGCATACAAGGGCACTTGTAGCCTCTGGGCTCTATGAAGAACCAACAGACCCTACAATTGCTTCCCAGAGAAGCATTTTTTCCGTTGGCATGATTTGTTGTGATGGAGAAGGCCGCCTAAACGAGAAGTCTGTCATGCTGCAGAGCAGTGTTGAGCATTCTGGAGGGGAATGTGTACGCCTAGACTTAGGACATTTAAGCCATTTTTCAGTTTTTCCTGGCCAGGTAGTAGGTATTGGAGGGCATAATCCTAGTGGGCATTGTTTGGTTGCATCTAAATTGGTGGATTCTATACCTATCTCTGTTGCTGATAAGGATTTGAATCCTGCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTGAACAGAGAGAGTTATCAATGATTATTGCAGCGGGCCCTTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCGCCACAGTTGCTTGTATTGCTGGGACCATTTATTGACTCTGAACACCCAGACATTAAGAAAGGAATCACGGAGAGGAGTTTTGATGAATTATTTCGTTTTGAAGTCCTAAGGAAGTTGGAAGATTATGTAGAATGCATGGGATCAGCAGCACGTGTTCTTCTTGTACCATCTATACGGGATGCTAACCACGATTTTGTTTTTCCTCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAATTGGTTGCTGCACCGTGGATATTCTCAAGCAGGTCAGTGGAGAGGAGATATCACGAACTGCAGCAGATGGAAAACCTAGTGATCGCTTGAGTAGACTTGCAAACCATATTCTCAATCAACAAAGCTTCTATCCACTTTACCCACCGGCAGAAAGTGTTCCCTTGGACTTTTCTCTTGCTCCAGAAGCTCTTCAACTCTCATTGGTTCCAGATGTTCTTATCTTACCCTCAGACATCAAGTACTTTGTCAAGGTGCTTAATAGCGAAAGTGAAGGGATAAGCCCCATGAAATGCATTGCCGTCAATCCGGGAAGATTAGCCAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTTTGGTGGGGGTCCGGACAAGATTAACGCTTCAATTGTTGGCATATAA 1863 0.4203 MKEEIKSEFRKSGFDLDEEEEILNKCLTFCINYSLSPSDLVSSWEVYYLNRLLNGSTVQNAEMDGFLLHLQNNKKEDVIMEEAGLHTYSIRDAEMLLSNDDETRDNAPGTPTDHHQDIYSPAHDTTPLMYGNVLSSGKPSKLVTPFSKRTDRFAVKFSINTMPDVENGMQEPNHENVENDEDDVIKKVLPRKRCSLVVHGSGPKQGCRFMYDRTEDRLNAIENRIKKHTRALVASGLYEEPTDPTIASQRSIFSVGMICCDGEGRLNEKSVMLQSSVEHSGGECVRLDLGHLSHFSVFPGQVVGIGGHNPSGHCLVASKLVDSIPISVADKDLNPAKKQAIDKENQPTDLLCEQRELSMIIAAGPFTTTDNLLFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGITERSFDELFRFEVLRKLEDYVECMGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLTNPGIFEANEVKIGCCTVDILKQVSGEEISRTAADGKPSDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDIKYFVKVLNSESEGISPMKCIAVNPGRLAKGEGGGTFVELDFGGGPDKINASIVGI. 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01227 620 PIRSF DNA_pol_alpha_2 1 608 IPR016722 -
Seca5g01227 620 MobiDBLite consensus disorder prediction 100 122 - -
Seca5g01227 620 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 606 IPR016722 -
Seca5g01227 620 Pfam DNA polymerase alpha/epsilon subunit B 360 570 IPR007185 GO:0003677|GO:0006260
Seca5g01227 620 Gene3D - 1 67 IPR043034 -
Seca5g01227 620 FunFam DNA polymerase alpha subunit B 340 505 - -
Seca5g01227 620 FunFam DNA polymerase alpha subunit B 1 75 - -
Seca5g01227 620 Coils Coil 211 231 - -
Seca5g01227 620 Gene3D - 339 504 - -
Seca5g01227 620 Gene3D - 511 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01227 Seca-Chr5 38673114 38680982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01227 3 620 Core DNA Replication Machinery Family AT1G67630 60.772 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01227 K02321 - gmx:100795306 984.171