Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01219 ATGGCTATTTTGGATTCTCTGTTGGGAGTTATCAATGTGGCATTCTTTTACACCATGTTGGTTTGGCTTTTGGTACATAGTTTGAGAGAAAGCAGGCGTAACTGCGTTTTATATTTGAAACGAGGGTGCACAAGATATGCTATTTTTGCCACCAGCACTGTTTTATCTAATGTTGTTATATCAGTTTTGAACATAGGTTTTGCCATCTATGAATATAGCAGTAGAAGAATTATAGGGTATTACTCTGTTTCTTTGGCCTTAACTTGGGTTTTAGCAACTATAGTCTCATTATATTCAATGAAGAGAATATTCAAGGAGAACCAAAGGTGGCCACTTGTCCTAGTCCTCTGGTGGCTCTTTGCCAGTATCTTAGATACAGCCTCAGTCTATCTGAAAATAACAAAGAATTTCAAATCACTGAATCTATGGTTTTTCCTGTTAGAGGATAACATAGTTGATATGGTTTCCTTTCCTTTGTTGTTATTGCTTTGTTTCAATGCTTTGCATACTGTTTTTGCTTGGAAATGGAAACCCAACGATATGGAACAACTCTTACTTCAGAAGGAATTACCAATACCATTACCATCCTCTTTGGAAGACGATGGAGAAACCTTCACAAATGCAAACATATGGAGCAAACTCACATTCCTATGGCTGAACCACATTTTTAAGAGAGGGAGAATTCAAAAACTTGAACTTCCTCATATTCCTTCTGTTCCTCATTCTGAAACAGCAGAGAATGCCTCCTCCATGTTGGAAGATTCAATTGGAAATCAGAAACTTGAAGGGGTTTCTTTGACCAAAGTTATTGTCCATTCTATCTGGAAATCCTTGGTCTTCAATGCAGTTTTTTCAGGAGTTAACACAATTGCCTCTTACATGGGTCCCTTGTTGATCACAAATTTTGTGAGTTTCTTATTGGACAAGGATGATAGTTCAAGCAACCAATATGGGCTGATTCTTGCATTTATTTTCTTCCTCTTGAAGATGGTGGAGTCACTAAGTCAAAGGCAATGGTACTTTGGTGCTCAACAAATTGGAATTCGGGTACGGGCAGCACTTATGGTGCTGATTTATAAAAAGTCCTTATCAATTAAGCATGCTGGTAAGATCACAAATTTGATCAATGTTGATGCTGAAAGAATTGGAGACTTTTGCTGGTACAGTCATGGAGTTTGGTTGCTTCCAGTTCAAGTCATTCTGGCCTTGGTGATCTTATGTAGGAATTTAGGTTATATCCCATCCATTGCAGCATTTGTTGTCACTGTTTTGGTTATGATATTCAATACACCTTTGGCCAATGTCCAAAAAAGTCTCCACTCTAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACTTCAGAGACCTTGAAGAACATTAGAATTTTAAAAATGCATTCTTGGGAGTCCATTTTCTTGAAGAAACTTCTCCACCTAAGGAAAATGGAGAGGGGGTGGCTGCAGAAATACCTTTACACATGCTCAACAGTAGCCACTCTATTTTGGACATCTCCAACATTAGTTTCTGCTGTCACTTTTGGTGTCTGTTTACTGGTGAAAACAGAATTAACAGCAGCTACAGTTCTATCAGCTTTAGCAACTTTTCGTATTTTACAAGAACCAATCTACAACCTACCTGAGCTTATCTCCATTATAGCTCAAACAAGAGTATCGGTTGATCGAATCCAGGATTTCATCAACCAAGAGGATAAAACATTGTTTGTGATTAGTCATGCTTTAAAATCTTCTTCTGAAATTGCCATTGAAGTCAGGGCAAGTGAATATGCATGGGAAACAGATAAAAACCAGAAGAAACCAACAATTCAAATTACAGAAACTCTGAAGATAAAGAAGGGTCAAAAGGTTGCAATTTGTGGATTAGTAGGATCTGGAAAATCAAGCTTACTCTGCTGTATGCTTGGTGAGTTATCAAGGATTTCTGGGGAAGGAATGGAAATCAAGGGAAGTAGAAGTTATGTGCCCCAAAGTCCTTGGATTCAATCTGGGACTATAAGGGAAAATATTTTGTTTGGAAAGGAAATGAATAAGAACTTGTATGAGAAAGTTTTAGAAGGTTGTGCTTTGCACCAAGATATGAACATGTGGGTTGATGGAGATTTGACAATGGTGGGGGAGAGAGGCATAAACTTAAGTGGAGGACAAAAACAAAGGATTCAACTAGCAAGGGCTGTTTACAATAATTCAGATATTTATTTTCTGGATGATCCTTTCAGTGCTGTTGATGCACATACTGGAACACATTTGTTTAAGAAATGTCTAATGCAACTTCTATATGAGAAAACAGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAAACAGCTGATCTTATTGTAGTGATGAAAGATGGAAAAATTGTAGAGGCAGGAAAGTATAAAGATTTGATAGAACTTCCCAATTCTGAACTTGTTGAACAAATGGCTGCTCATAAAGAAACATTGAAGCAAATAAATCCATGCAAAGATGATGATTCTGTGAGCTGTAGATCCTACCAAATAAATCAGATTGAAGGTACTGAAAAAAATCTTCCAAAGACTGTCAAAGATTGCAAGCTTTTGGAGAAAACCAATGAAGAGGAAGCAGAGAGTGGTCGAGTGAAATGGAATGTTTACTCATCCTTTGTTACATCAGCTTATAGAGGTGTACTTGTTCCCTTTGTTCTTCTGTGCCAAATTTTCTTTCAGGGATTGCAGATGGGAAGCAATTATTGGGTTGCTTGGGCCACAGAACAAAGGGGAAAGGTCAGTAATGGGCAGCTTATAGGGACATTTGTCCTACTATCCGGTGGCAGCTCCATCTTCATATTTGGAAGGGCTTTTTTAATGGCAAAAATTGCTGTAGAGACTGCTCAATGTCTTTTTCATGGAATGATAACTTCAATTTTCAGGGCGCCTATTTCCTTTTTTGATACCACACCTTCAAGCCAAATCCTGAGCAGGTCTTCTACGGATCAAAGTACAATAGACACAGACATACCATACAGATTAGCTGGACTTGTATTTGCACTTATCCAGTTGGTGAGTATCATTGTCCTAATGTCCCAGGTTGCATGGCAAGTCATTCTCCTATTTCTTGTTGTGCTTGCTATCTCCATCTGGTACCAGGCTTATTACATCACTAGTGCAAGGGAATTAGCCAGGATGGTAGGGATCCAAAAGGCTCCAATTTTGCATCACTTCTCAGAATCAGTTGCAGGAGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAAGATTTTTGACTAAAGTTATGACTCTAATTGATGATTATTCTCGAGTAGCCTTTTACAATTATGCTACCATGGAATGGTTGTCTATCCGAATCAATTTTCTCTTTAATTTGGTCTTCTATTTTGTTCTCACCATCTTGGTTATTCTGCCAAGGTCTGCCATTGATCCTAGCTTGGCAGGATTGATTGCTACTTATGGTTTGAACCTAAATGTCCTACAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATCTCAGTTGAGAGAATATTACAGTTCACTAACATACCAAGTGAAGCACCCTTAATAATTCAAGATTCTAGGCCTGAGCCTGAGTGGCCTAGGGAGGGAAAGATTGAACTGCATAACCTTCATATACAGTATGATCCTGCTTCTCCTATGGTTCTCAAAGGTGTCACTTGCATCTTCCCAGGACAAAAGAAAATTGGAGTTGTAGGCAGGACAGGAAGTGGGAAATCCACCCTTGTTCAAGCTCTCTTTCGAGTGGTGGAGCCTTCTGCAGGATGGATACTTATTGATGGTATAGACATTTCAAATATTGGTCTGCAGGACCTAAGATCTAAGCTTGGTATAATTCCTCAAGATCCAACCTTGTTTCAAGGCACTGTGAGGACTAACTTGGATCCTCTAGAACAACATTCAGATCAAGAACTTTGGGAGGTTCTCAGTAAGTGCCATCTGTCAGAAATAGTAAGGCAGGATGCAAGGCTTCTTGATGCACCAGTGGCCGAAAATGGTGAAAATTGGAGTGTGGGGCAAAGGCAGTTGGTTTGCCTTGCTAGGCTGCTGTTAAAGAAAAGAAGAATTATGGTCTTAGATGAAGCAACTGCATCCATTGACACAACAACTGATAATTTAATTCAAAAGACTATTAGGGAAGAGACAAGTGGATGCACAGTCATTACCGTGGCACATAGAATTCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATCAAGGGAATATTGTAGAGTATGATTGCCCAGCTCAATTGCTGCAGAATAATTCTTCATCATTCTCAAAGTTGGTGTCAGAATTTTTGAGCAGATCATCCCAAAATAACTACCAAAAGAATACAAAATAA 4374 0.3873 MAILDSLLGVINVAFFYTMLVWLLVHSLRESRRNCVLYLKRGCTRYAIFATSTVLSNVVISVLNIGFAIYEYSSRRIIGYYSVSLALTWVLATIVSLYSMKRIFKENQRWPLVLVLWWLFASILDTASVYLKITKNFKSLNLWFFLLEDNIVDMVSFPLLLLLCFNALHTVFAWKWKPNDMEQLLLQKELPIPLPSSLEDDGETFTNANIWSKLTFLWLNHIFKRGRIQKLELPHIPSVPHSETAENASSMLEDSIGNQKLEGVSLTKVIVHSIWKSLVFNAVFSGVNTIASYMGPLLITNFVSFLLDKDDSSSNQYGLILAFIFFLLKMVESLSQRQWYFGAQQIGIRVRAALMVLIYKKSLSIKHAGKITNLINVDAERIGDFCWYSHGVWLLPVQVILALVILCRNLGYIPSIAAFVVTVLVMIFNTPLANVQKSLHSKIMEAKDSRIKMTSETLKNIRILKMHSWESIFLKKLLHLRKMERGWLQKYLYTCSTVATLFWTSPTLVSAVTFGVCLLVKTELTAATVLSALATFRILQEPIYNLPELISIIAQTRVSVDRIQDFINQEDKTLFVISHALKSSSEIAIEVRASEYAWETDKNQKKPTIQITETLKIKKGQKVAICGLVGSGKSSLLCCMLGELSRISGEGMEIKGSRSYVPQSPWIQSGTIRENILFGKEMNKNLYEKVLEGCALHQDMNMWVDGDLTMVGERGINLSGGQKQRIQLARAVYNNSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLYEKTVVYATHQLEFLETADLIVVMKDGKIVEAGKYKDLIELPNSELVEQMAAHKETLKQINPCKDDDSVSCRSYQINQIEGTEKNLPKTVKDCKLLEKTNEEEAESGRVKWNVYSSFVTSAYRGVLVPFVLLCQIFFQGLQMGSNYWVAWATEQRGKVSNGQLIGTFVLLSGGSSIFIFGRAFLMAKIAVETAQCLFHGMITSIFRAPISFFDTTPSSQILSRSSTDQSTIDTDIPYRLAGLVFALIQLVSIIVLMSQVAWQVILLFLVVLAISIWYQAYYITSARELARMVGIQKAPILHHFSESVAGAATIRCFNQEQRFLTKVMTLIDDYSRVAFYNYATMEWLSIRINFLFNLVFYFVLTILVILPRSAIDPSLAGLIATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLIIQDSRPEPEWPREGKIELHNLHIQYDPASPMVLKGVTCIFPGQKKIGVVGRTGSGKSTLVQALFRVVEPSAGWILIDGIDISNIGLQDLRSKLGIIPQDPTLFQGTVRTNLDPLEQHSDQELWEVLSKCHLSEIVRQDARLLDAPVAENGENWSVGQRQLVCLARLLLKKRRIMVLDEATASIDTTTDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDQGNIVEYDCPAQLLQNNSSSFSKLVSEFLSRSSQNNYQKNTK. 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01219 1457 Gene3D ABC transporter type 1, transmembrane domain 855 1188 IPR036640 GO:0005524|GO:0016020
Seca5g01219 1457 CDD ABCC_MRP_domain1 589 793 - -
Seca5g01219 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 591 816 IPR003439 GO:0005524
Seca5g01219 1457 SUPERFAMILY ABC transporter transmembrane region 274 570 IPR036640 GO:0005524|GO:0016020
Seca5g01219 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1198 1433 IPR027417 -
Seca5g01219 1457 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1446 - -
Seca5g01219 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 806 IPR027417 -
Seca5g01219 1457 FunFam Multidrug resistance-associated protein 4 576 833 - -
Seca5g01219 1457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1207 1441 IPR003439 GO:0005524
Seca5g01219 1457 Gene3D - 1190 1443 IPR027417 -
Seca5g01219 1457 CDD ABC_6TM_ABCC_D1 280 563 IPR044746 GO:0140359
Seca5g01219 1457 CDD ABCC_MRP_domain2 1205 1425 - -
Seca5g01219 1457 Gene3D ABC transporter type 1, transmembrane domain 252 573 IPR036640 GO:0005524|GO:0016020
Seca5g01219 1457 FunFam ABC transporter C family member 10 262 571 - -
Seca5g01219 1457 FunFam ABC transporter C family member 3 1190 1442 - -
Seca5g01219 1457 ProSitePatterns ABC transporters family signature. 718 732 IPR017871 GO:0005524|GO:0016887
Seca5g01219 1457 Pfam ABC transporter 614 745 IPR003439 GO:0005524
Seca5g01219 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 894 1170 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g01219 1457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 555 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g01219 1457 SUPERFAMILY ABC transporter transmembrane region 892 1187 IPR036640 GO:0005524|GO:0016020
Seca5g01219 1457 FunFam ABC transporter C family member 5 856 1188 - -
Seca5g01219 1457 Pfam ABC transporter 1224 1372 IPR003439 GO:0005524
Seca5g01219 1457 CDD ABC_6TM_ABCC_D2 892 1182 IPR044726 GO:0140359
Seca5g01219 1457 SMART AAA_5 619 793 IPR003593 GO:0016887
Seca5g01219 1457 SMART AAA_5 1233 1424 IPR003593 GO:0016887
Seca5g01219 1457 Gene3D - 602 838 IPR027417 -
Seca5g01219 1457 Pfam ABC transporter transmembrane region 280 542 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g01219 1457 Pfam ABC transporter transmembrane region 912 1132 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01219 Seca-Chr5 38526279 38532209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01219 606 835 Calmodulin-binding Proteins AT2G36910 29.412 6.10e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01219 - - gmx:100809063 2156.33