Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01217 ATGTATTTATCAGAGAAGCCTCGTCCCATCGATTTCTACAAGGAGGAAGGGGCGCGAGACATGATGATCGAGGTGGTCTCCAACGGCGAACTTGCTCCGCCGCCGCCGCCGCACCACCAGCAACCGCCGCCGCAGATGATCCTCGGTGAGAGCAGCGGCGAGGACCCTGAGGTTGAGATCAAGGCTCCGAAGAAGCGCGCGGAGACGTGGGTTCAGGATGAGACGCGAAGCCTCATTGGACTTCGGCGTGAGATGGACGCGCTTTTCAACACTTCTAAGTCTAATAAGCACTTGTGGGAACAGATATCGGCGAAGATGAGGGAAAAAGGGTTCGATCGGTCCCCAACTATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCTAAGCACCAAGATAGAGGAGGGAGTGGTTCTGCTAAGATGTCTTATTACAAAGAGATTGATGAGATCCTTAGAGAGAGGAGCAAGAGTGTGCAGTACAAGAGCCCTACTCCTCCTTCTAAAGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTGTATTGATGATACCAGCATTTCTTTTGGGCCTGTAG 585 0.5162 MYLSEKPRPIDFYKEEGARDMMIEVVSNGELAPPPPPHHQQPPPQMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKSVQYKSPTPPSKVDSFMQFADKGVLMIPAFLLGL. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01217 194 MobiDBLite consensus disorder prediction 26 65 - -
Seca5g01217 194 CDD GT1 68 133 - -
Seca5g01217 194 Pfam Myb/SANT-like DNA-binding domain 69 154 IPR044822 -
Seca5g01217 194 FunFam trihelix transcription factor GT-1 70 132 - -
Seca5g01217 194 PANTHER FI21293P1 44 166 - -
Seca5g01217 194 Gene3D - 70 132 - -
Seca5g01217 194 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Seca5g01217 194 SMART sant 66 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01217 Seca-Chr5 38449863 38456754 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01217 1 183 Trihelix Transcription Factor Family AT1G13450 66.507 1.35e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca5g01217 Myb_DNA-bind_4 4.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01217 - - ccaj:109807736 338.191