Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01215 ATGTATTTATCAGAGAAGCCTCGTCCCATCGATTTCTACAAGGAGGAAGGGGCGCGAGACATGATGATCGAGGTGGTCTCCAACGGCGAACTTGCTCCGCCGCCGCCGCCGCACCACCAGCAACCGCCGCCGCAGATGATCCTCGGTGAGAGCAGCGGCGAGGACCCTGAGGTTGAGATCAAGGCTCCGAAGAAGCGCGCGGAGACGTGGGTTCAGGATGAGACGCGAAGCCTCATTGGACTTCGGCGTGAGATGGACGCGCTTTTCAACACTTCTAAGTCTAATAAGCACTTGTGGGAACAGATATCGGCGAAGATGAGGGAAAAAGGGTTCGATCGGTCCCCAACTATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCTAAGCACCAAGATAGAGGAGGGAGTGGTTCTGCTAAGATGTCTTATTACAAAGAGATTGATGAGATCCTTAGAGAGAGGAGCAAGAGTGTGCAGTACAAGAGCCCTACTCCTCCTTCTAAAGTTGATTCTTTCATGCAGTTTGCTGATAAAGTTTTCTTTCTTATGCAATCATGCTTATTTGAGTAA 582 0.5069 MYLSEKPRPIDFYKEEGARDMMIEVVSNGELAPPPPPHHQQPPPQMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKSVQYKSPTPPSKVDSFMQFADKVFFLMQSCLFE. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01215 193 MobiDBLite consensus disorder prediction 26 65 - -
Seca5g01215 193 CDD GT1 68 133 - -
Seca5g01215 193 PANTHER FI21293P1 44 166 - -
Seca5g01215 193 FunFam trihelix transcription factor GT-1 70 132 - -
Seca5g01215 193 Pfam Myb/SANT-like DNA-binding domain 69 154 IPR044822 -
Seca5g01215 193 Gene3D - 70 132 - -
Seca5g01215 193 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Seca5g01215 193 SMART sant 66 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01215 Seca-Chr5 38402926 38403623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01215 1 184 Trihelix Transcription Factor Family AT1G13450 66.190 8.64e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca5g01215 Myb_DNA-bind_4 4.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01215 - - ccaj:109807736 334.724