Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g01209 | ATGGAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAATGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAAGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGCGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGTTGAGTCTAAAGAAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA | 516 | 0.3934 | MELLVQLFEECFKWKNDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIAKAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKECVSNMIFSEDFVENPSQWQAEKIEDDILREMVENVESKEIHMIMKNEKASKN. | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g01209 | 171 | CDD | SF2_C_SNF | 7 | 102 | - | - | |
Seca5g01209 | 171 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 162 | IPR001650 | - | |
Seca5g01209 | 171 | Gene3D | - | 1 | 167 | IPR027417 | - | |
Seca5g01209 | 171 | Pfam | Helicase conserved C-terminal domain | 10 | 90 | IPR001650 | - | |
Seca5g01209 | 171 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 149 | IPR027417 | - | |
Seca5g01209 | 171 | SMART | helicmild6 | 2 | 91 | IPR001650 | - | |
Seca5g01209 | 171 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED | 2 | 169 | IPR044567 | GO:0080188 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g01209 | Seca-Chr5 | 38038320 | 38038835 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g01209 | 20 | 109 | RAD5 or RAD16-like Gene Family | AT5G05130 | 40.659 | 5.94e-13 | 63.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g01209 | K10875 | - | ath:AT3G42670 | 257.684 |