Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01209 ATGGAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAATGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAAGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGCGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGTTGAGTCTAAAGAAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 516 0.3934 MELLVQLFEECFKWKNDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIAKAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKECVSNMIFSEDFVENPSQWQAEKIEDDILREMVENVESKEIHMIMKNEKASKN. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01209 171 CDD SF2_C_SNF 7 102 - -
Seca5g01209 171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 162 IPR001650 -
Seca5g01209 171 Gene3D - 1 167 IPR027417 -
Seca5g01209 171 Pfam Helicase conserved C-terminal domain 10 90 IPR001650 -
Seca5g01209 171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 149 IPR027417 -
Seca5g01209 171 SMART helicmild6 2 91 IPR001650 -
Seca5g01209 171 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 169 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01209 Seca-Chr5 38038320 38038835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01209 20 109 RAD5 or RAD16-like Gene Family AT5G05130 40.659 5.94e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01209 K10875 - ath:AT3G42670 257.684