Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01208 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACATTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCGAACACACCAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGGAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAATACCGCAAAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGATGAGTCTAAAGAAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1419 0.3904 MEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPNTPTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKKEKVLIFCRNLAPMELLVQLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRKTTWKEWVSNMIFSEDFVENPSQWQAEKIEDDILREMVENDESKEIHMIMKNEKASKN. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01208 472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 439 IPR001650 -
Seca5g01208 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 457 IPR027417 -
Seca5g01208 472 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 470 IPR044567 GO:0080188
Seca5g01208 472 Pfam Helicase conserved C-terminal domain 275 391 IPR001650 -
Seca5g01208 472 Pfam SNF2-related domain 49 220 IPR000330 GO:0005524|GO:0140658
Seca5g01208 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 118 IPR027417 -
Seca5g01208 472 SMART helicmild6 303 392 IPR001650 -
Seca5g01208 472 Gene3D - 44 158 IPR038718 -
Seca5g01208 472 Gene3D - 195 472 IPR027417 -
Seca5g01208 472 CDD SF2_C_SNF 267 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01208 Seca-Chr5 38004856 38006529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01208 321 410 RAD5 or RAD16-like Gene Family AT5G05130 41.758 8.64e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01208 SNF2_N 2.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01208 K10875 - jre:108991882 626.706