Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01206 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAGCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACATTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCGAACAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAACCGTTGACTATTCCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGAAGGAGAAGGTTTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTCAGCTTCTCGGTTGA 1215 0.3835 MHDHQKKGFQFIWQNIAGSIQPALMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPNKKPLILAPKTTLYTWYKEFIKPLTIPGVPNPTSDVKHVLDCLEKITRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLETATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKKEKVLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTQLLG. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01206 404 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 183 IPR014001 -
Seca5g01206 404 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 104 401 IPR044567 GO:0080188
Seca5g01206 404 SMART ultradead3 8 195 IPR014001 -
Seca5g01206 404 Pfam SNF2-related domain 28 289 IPR000330 GO:0005524|GO:0140658
Seca5g01206 404 Gene3D - 1 224 IPR038718 -
Seca5g01206 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 400 IPR027417 -
Seca5g01206 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01206 Seca-Chr5 37948578 37950011 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01206 SNF2_N 4.5e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01206 K10875 - gmx:100811703 538.495