Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01204 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAGCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACATTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCGAACAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAACCGTTGACTATTCCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAACGTGTTCCCTTTGGAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGAAGGAGAAGGTTTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTATGCAGCTTCTCGGTTGA 1215 0.3827 MHDHQKKGFQFIWQNIAGSIQPALMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPNKKPLILAPKTTLYTWYKEFIKPLTIPGVPNPTSDVKHVLDCLEKITRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSNVFPLETATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKKEKVLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLMQLLG. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01204 404 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 183 IPR014001 -
Seca5g01204 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
Seca5g01204 404 SMART ultradead3 8 195 IPR014001 -
Seca5g01204 404 Gene3D - 1 224 IPR038718 -
Seca5g01204 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 399 IPR027417 -
Seca5g01204 404 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 104 400 IPR044567 GO:0080188
Seca5g01204 404 Pfam SNF2-related domain 28 296 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01204 Seca-Chr5 37919648 37921081 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01204 SNF2_N 4.9e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01204 K10875 - gmx:100811703 538.495