Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01201 ATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGGAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGTAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGATGAGTCTAAAGAAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1047 0.3849 MKVETELRILLSGTLPKFVQEVLKELDIKQKKGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKKEKVLIFCRNLAPMELLVQLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENPSQWQVEKIEDDILREMVENDESKEIHMIMKNEKASKN. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01201 348 Pfam Helicase conserved C-terminal domain 151 267 IPR001650 -
Seca5g01201 348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 333 IPR027417 -
Seca5g01201 348 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 315 IPR001650 -
Seca5g01201 348 CDD SF2_C_SNF 143 279 - -
Seca5g01201 348 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 346 IPR044567 GO:0080188
Seca5g01201 348 Gene3D - 84 348 IPR027417 -
Seca5g01201 348 SMART helicmild6 179 268 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01201 Seca-Chr5 37863731 37864900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01201 197 286 RAD5 or RAD16-like Gene Family AT5G05130 41.758 5.22e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01201 K10875 - csav:115705141 480.715