Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01195 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAGCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGTTGGAAAAACATTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCGAACAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTGTTCCAGTGTATCTAATTCATGGTCATAAAGACATGAGAGACTTTGATGAAACACCGTTGACTTTTCCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTTGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTTTTAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGGAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGTTCCATGTGGAGTTTCAAAGGTACTACTTGCGCTATTGCAAGGGCTTTTCGTCCTGGCTAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATAGGTTTCCAGCATGA 1509 0.389 MHDHQKKGFQFIWQNIAGSIQPALMEVESERRGGCVISHTPGVGKTFLVIAFLVSYLKLFPNKKPLILAPKTTLYTWYKEFIKWEIPVPVYLIHGHKDMRDFDETPLTFPGVPNPTSDVKHVLDCLEKIKKLHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVFKKEKVLIFCRNLAPMELLVQLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEVPCGVSKVLLALLQGLFVLARKRWFMCINSWQKAQWRKISTAEPLGKNRFPA. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01195 502 Gene3D - 353 464 IPR027417 -
Seca5g01195 502 SMART ultradead3 8 237 IPR014001 -
Seca5g01195 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 227 IPR027417 -
Seca5g01195 502 Pfam SNF2-related domain 28 329 IPR000330 GO:0005524|GO:0140658
Seca5g01195 502 Gene3D - 1 267 IPR038718 -
Seca5g01195 502 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 461 IPR044567 GO:0080188
Seca5g01195 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 225 IPR014001 -
Seca5g01195 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 461 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01195 Seca-Chr5 37688359 37689961 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01195 SNF2_N 9.7e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01195 K10875 - gmx:100811703 659.062