Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01193 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACACCTGGAGCTGGAAAAACATTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCGAACAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTGTTCCAGTGTATCTAATTCATGGTCATAAAGACATGAGAGACTTTGATGAAACACCGTTGACTATTCCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAGTTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAAAATAATTTTTGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATAGAAAACAAAAGAATGGAAATGATAAAAATCCAGAGAAAGCACAACTTTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGAAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGGAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGGACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAATTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTTGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAAGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCACAGAACCACTTGGAAAGAATGGGTTTCCAGCATGATTTTCAGTGAGGATTTGGTGGAGAACCTTTCCCAGTGGTAA 1572 0.3931 MEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPNKKPLILAPKTTLYTWYKEFIKWEIPVPVYLIHGHKDMRDFDETPLTIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRESSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVQEVLKELDRKQKNGNDKNPEKAQLLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLKKLQKKMAGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKKEKVLIFCRNLAPMELLVQLFEECFKWKKDGEILLLYGGQDLFERGKVIDKFEDPCGISKVLLASITACAEGISLTAASRLIFLDLEWNPSKIKQAIAKAFRPGQEKMVYVYQLLAKGSMEEDKYHRTTWKEWVSSMIFSEDLVENLSQW. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01193 523 Gene3D - 280 522 IPR027417 -
Seca5g01193 523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 523 IPR001650 -
Seca5g01193 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 203 IPR027417 -
Seca5g01193 523 CDD SF2_C_SNF 352 488 - -
Seca5g01193 523 Gene3D - 1 243 IPR038718 -
Seca5g01193 523 Pfam Helicase conserved C-terminal domain 360 476 IPR001650 -
Seca5g01193 523 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 522 IPR044567 GO:0080188
Seca5g01193 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 514 IPR027417 -
Seca5g01193 523 SMART ultradead3 2 213 IPR014001 -
Seca5g01193 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca5g01193 523 SMART helicmild6 388 477 IPR001650 -
Seca5g01193 523 Pfam SNF2-related domain 8 305 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01193 Seca-Chr5 37613396 37623155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01193 406 495 RAD5 or RAD16-like Gene Family AT5G05130 40.659 5.34e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g01193 SNF2_N 2.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01193 K10875 - gmx:100811703 774.237