Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01187 ATGAAGAGAGTCACGATGGGTGTTCCACAAACAGCAACAAGTCCTCCTCCTCCACCTCCACACCTGTATCCTCAGGAACTTCAGCTTAAGCTTTACCAGGCTTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTGTTTCTCCTCTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTTCTCCACACTTATTACTTCCCAGGAGTACTGCCAATGTTCCATCAACTAACTATCGCTATCGTTCCTCACCTTGTCGTTTGGATTTGACTGTGCAAATCCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTTTGTTTAGGAGAATTTGAAATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATCGACTGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCGCCTATTAATATTATATCAGACCCACACCAGCAACAAGGACAAGGTGGTGCTATCATTTCACACCTTCCATTACAAATCTTATCATTGCCACCTCAAACAGATCAGAATGAACCTGCTGCTGCTGCTTCCATAATTTTCTCAAGGGAATGA 663 0.4238 MKRVTMGVPQTATSPPPPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSSPHLLLPRSTANVPSTNYRYRSSPCRLDLTVQILDKLPRILFDEDLLARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPHQQQGQGGAIISHLPLQILSLPPQTDQNEPAAAASIIFSRE. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01187 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 162 IPR013083 -
Seca5g01187 220 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 84 162 - -
Seca5g01187 220 PANTHER RING-H2 FINGER PROTEIN ATL16 13 179 IPR044600 GO:0016567|GO:0016740
Seca5g01187 220 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g01187 220 CDD RING-H2_EL5-like 115 157 - -
Seca5g01187 220 SMART ring_2 115 156 IPR001841 -
Seca5g01187 220 Pfam Ring finger domain 115 157 IPR001841 -
Seca5g01187 220 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Seca5g01187 220 SUPERFAMILY RING/U-box 93 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01187 Seca-Chr5 37317087 37320160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01187 15 162 C3H Transcription Factor Family AT4G10150 40.000 6.08e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01187 K19039 - gmx:100813129 293.893