Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g01187 | ATGAAGAGAGTCACGATGGGTGTTCCACAAACAGCAACAAGTCCTCCTCCTCCACCTCCACACCTGTATCCTCAGGAACTTCAGCTTAAGCTTTACCAGGCTTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTGTTTCTCCTCTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTTCTCCACACTTATTACTTCCCAGGAGTACTGCCAATGTTCCATCAACTAACTATCGCTATCGTTCCTCACCTTGTCGTTTGGATTTGACTGTGCAAATCCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTAGCAAGGGATTCACTATGTTGTGTTTGTTTAGGAGAATTTGAAATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATCGACTGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCGCCTATTAATATTATATCAGACCCACACCAGCAACAAGGACAAGGTGGTGCTATCATTTCACACCTTCCATTACAAATCTTATCATTGCCACCTCAAACAGATCAGAATGAACCTGCTGCTGCTGCTTCCATAATTTTCTCAAGGGAATGA | 663 | 0.4238 | MKRVTMGVPQTATSPPPPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSSPHLLLPRSTANVPSTNYRYRSSPCRLDLTVQILDKLPRILFDEDLLARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPHQQQGQGGAIISHLPLQILSLPPQTDQNEPAAAASIIFSRE. | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g01187 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 162 | IPR013083 | - | |
Seca5g01187 | 220 | FunFam | Putative E3 ubiquitin-protein ligase RHA4A isoform A | 84 | 162 | - | - | |
Seca5g01187 | 220 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 13 | 179 | IPR044600 | GO:0016567|GO:0016740 | |
Seca5g01187 | 220 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Seca5g01187 | 220 | CDD | RING-H2_EL5-like | 115 | 157 | - | - | |
Seca5g01187 | 220 | SMART | ring_2 | 115 | 156 | IPR001841 | - | |
Seca5g01187 | 220 | Pfam | Ring finger domain | 115 | 157 | IPR001841 | - | |
Seca5g01187 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - | |
Seca5g01187 | 220 | SUPERFAMILY | RING/U-box | 93 | 169 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g01187 | Seca-Chr5 | 37317087 | 37320160 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g01187 | 15 | 162 | C3H Transcription Factor Family | AT4G10150 | 40.000 | 6.08e-36 | 125 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g01187 | K19039 | - | gmx:100813129 | 293.893 |