Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01185 ATGTTACTTCTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGAGTGAAGTCGCAGAATATGTTGGAACGAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATACATGAATTCCCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGTAGAGAGGAACTCCTTGCCATGGCAAAAGGACATGAAGTCATTAAAGATTTTCCTCCAACACCAGAGCTTTCTCTGAAAGACGAACCTTCCTTCTCTGACGGGATTAACTCTGGGGATTCTAAGAAGGCAGAAACCACTAATCAAACAATGTCCAGGTTAACCTTAGTATGTGAGAAGGCTTATTCAAGTACAATTAATAGAGCTTCCAACGTGAGTCAGAATAATGGAGTTAAGGTGGAAGTAGAATCTCAATCAGATTGGAGCATTAGAGAGAAGAAACCTAAATTATCTGGGGAAGAGAGGCCTTCTATGATGGAGATGAGTGGATACAGTTTTAAGAGAGAGGAATTTGAAATTGAATACGACAATGATGCAGAACAAGTATTGGCAGATATGGAATTTAAGGACACCGATACTGAAGCTGAACGTGAAACAAAACTGTGTGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGAAAGCGCAGAAAGAATTTTATACTTGAAAGAAATTTACTTTATCCCGATCCTTTTGAGAGATTTCTCTCAGCTAAGGAGATTCAAATATGTCAGCGCTACAAGGTCTTCATGCGGTTCCACTCAAAAGAAGAGCATATGGAGTTGTTAAAAAATAGTATTGAAGAACATCGACTTATCAAAAGAATACAAGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGCTGAAGCTTATCAATATATTGAACACAAGAGGACAAAGGAAGTTGAACAAACTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATTATCTCAAAGGAGAAATTGATAGTAGCCCCCGGGGTCTTCACAAGGGGACTACAACATCATTTACTGGTGTCAAGGATTCACCTGCTGTACAAGCTATCACAAGGTCGTTAGAAGAATGGGATATCAGTGGATTTGAAGGGGCAGAATTACTATCATTGGGTTGGTAG 1155 0.3939 MLLLEGIEMYGFGNWSEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSREELLAMAKGHEVIKDFPPTPELSLKDEPSFSDGINSGDSKKAETTNQTMSRLTLVCEKAYSSTINRASNVSQNNGVKVEVESQSDWSIREKKPKLSGEERPSMMEMSGYSFKREEFEIEYDNDAEQVLADMEFKDTDTEAERETKLCVLHIYSKRLDERKRRKNFILERNLLYPDPFERFLSAKEIQICQRYKVFMRFHSKEEHMELLKNSIEEHRLIKRIQDLQEARIAGCVTAAEAYQYIEHKRTKEVEQTACKESGQIGTSAKTLQRPNYLKGEIDSSPRGLHKGTTTSFTGVKDSPAVQAITRSLEEWDISGFEGAELLSLGW. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01185 384 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 337 - -
Seca5g01185 384 ProSiteProfiles SANT domain profile. 1 42 IPR017884 -
Seca5g01185 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 42 IPR017930 -
Seca5g01185 384 MobiDBLite consensus disorder prediction 86 104 - -
Seca5g01185 384 SUPERFAMILY Homeodomain-like 2 41 IPR009057 -
Seca5g01185 384 Gene3D - 1 42 - -
Seca5g01185 384 CDD SANT 2 35 IPR001005 -
Seca5g01185 384 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
Seca5g01185 384 Pfam Myb-like DNA-binding domain 2 35 IPR001005 -
Seca5g01185 384 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01185 Seca-Chr5 37131649 37156864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01185 1 381 EF-hand Containing Proteins AT3G07740 51.036 4.44e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g01185 Myb_DNA-binding 5.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01185 K11314 - gmx:100779424 609.372