Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01175 ATGGTGGAAGCTTCAGGGATCATGTACGCTACTCTTATTCCTGGTTTTAGCCCAACAATTCAGAGAATGAGAATCCATGTGGGTCACCGTCAAGTAGCTGTATCACGCAGGTACCAAATTCATTGTTCAGCCTCTGCAAGTGCAAATGGTGCCACTCAGAGTCAAACCTCAGTGATGGAAACTATTCCTTGGGGTTGTGATATTGATTCTCTAGAGAATGCATCAGCTCTGCAGAGATGGTTGTCAGAGTCAGGGCTTCCACTACAGAAGATGGCCATTGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCCTTGAAGAATATAAGGAAAGGGGAGAAACTGCTCTTTGTGCCTCCCTCACTAGTTGTAACTGCAGATTCTGAGTGGAGCTGCCCAGAAGCTGGTGCGGTGTTGAAAAGGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGTCTTATGAAATCTTCAAGATGGTTCAATTATATATCGGCCTTGCCTCGTCAACCTTACTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGATCAGAATATTTTCCAAATACCCTGATTTATTCCCTGAAGAGGTGTTCAACATGCAGTCCTTCAAATGGGCATTTGGCATTCTTTTCTCTCGCTTGGTCCGGTTACCCTCAATGGATGGGAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCACAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGGTGTCAAAGGGAATTTTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTCTGTTATCTTATGGTTTTGTTCCAAGGGAGGGAGCTAATCCTAGTGATTCAGTTGAGCTGTCACTGTCACTCAAGAAATCTGATGAGTCCTATAAGGAGAAGTTAGAAGTGTTGAAGAAGTATGGATTGTCGGGATCTCAGTGTTTTCCTATAAAGATTACTGGTTGGCCAGTAGAGTTAATGGCTTATGCTTATTTAGCTGTCAGTCCTTCAAGCATGAGAGGGAAATTTGAAGAGATGGCTGCTGCAGCATCGAATAAAGTTACCTCCAAGAAGGACTTGAGATATCCTGAAATAGAGGAGGAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTGCAGTGCACAATTATCCTAAATGAAGTGTGCATTTGTTTCTGGCAGGTAAGTGGATCACTGGATTTGGATGTGACTTCCCCAAAACAACTCAACCGTAGACTCTTTCTAAAACAGCTAGCTGTAGACTTGTGTAATAGCGAGCGAAGGATATTATTCCGGGCTCAATATATACTGCGAAGAAGACTGAGGGATATGAGGGCTGGTGAATTAAGAGCTTTAAAAATCTTTGATAGGTTCCGGAACCTTTTCGGATGA 1557 0.4245 MVEASGIMYATLIPGFSPTIQRMRIHVGHRQVAVSRRYQIHCSASASANGATQSQTSVMETIPWGCDIDSLENASALQRWLSESGLPLQKMAIEKVDVGERGLVALKNIRKGEKLLFVPPSLVVTADSEWSCPEAGAVLKRNSVPDWPLLATYLISEASLMKSSRWFNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRIRIFSKYPDLFPEEVFNMQSFKWAFGILFSRLVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKVSKGIFFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPSDSVELSLSLKKSDESYKEKLEVLKKYGLSGSQCFPIKITGWPVELMAYAYLAVSPSSMRGKFEEMAAAASNKVTSKKDLRYPEIEEEALQFILDSCESSISKYNKFLQCTIILNEVCICFWQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRAGELRALKIFDRFRNLFG. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01175 518 ProSiteProfiles SET domain profile. 89 305 IPR001214 GO:0005515
Seca5g01175 518 Pfam SET domain 101 305 IPR001214 GO:0005515
Seca5g01175 518 CDD SET_RBCMT 84 319 IPR044431 GO:0016279|GO:0018022
Seca5g01175 518 SUPERFAMILY SET domain 73 321 IPR046341 -
Seca5g01175 518 SMART set_7 89 311 IPR001214 GO:0005515
Seca5g01175 518 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 71 443 - -
Seca5g01175 518 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 55 318 - -
Seca5g01175 518 Pfam Rubisco LSMT substrate-binding 338 485 IPR015353 -
Seca5g01175 518 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 508 IPR036464 -
Seca5g01175 518 FunFam Rubisco methyltransferase family protein 324 501 - -
Seca5g01175 518 PIRSF RMT_SET 4 515 IPR011192 GO:0009507|GO:0030785
Seca5g01175 518 Gene3D set domain protein methyltransferase, domain 1 26 318 - -
Seca5g01175 518 Gene3D - 324 507 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01175 Seca-Chr5 36663149 36671096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01175 76 274 NAC Transcription Factor Family AT3G56570 23.039 2.46e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g01175 SET 7.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01175 - - cam:101500121 823.928