Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01170 ATGGGTTATATGTGTGATTTTTGTGGAGACCAGAGGTCAATGGTGTACTGCCGCTCTGATGCTGCATGCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCTAAACGGCATTCAAGGACCCTTTTATGTGAAAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGCTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGTACATCTACATCTTCTTCAACACATAAGAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCAGCAGAACTGTCTTCAATATGGTCATTTGTGTTAGATATCCCTTTTATAAGTGAATCTACATGTGAGCAAGAACTAGGTTTGATGAGTATTAATGAGAACAGCAACAAGAGTGCTTGGATTCCTCCAGAAAACCAGAATGTGTCTGGCTCAGGTCAAGCAACTGATTTACCTGGTTTAGATAAGTCTTGGGTTGGTACATCTTCAATTCCTGAGTCAAGCTCAGAACCTCGTATTCTAGACCAGCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTTTACTGTCCTGCTGCAAAATGCCCTGCACTATATGAAGATGAAGATGATAATCTGTATGGCGATTTCAACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCCGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGGCAAAGGATGTGTCTGCTGGAGATTCTAATTGTCAGGATGCCGTTGCTGCCGAGAGCTTTTATGTGCAGGGGTCATCAGTTGGAGTGGTCAATGCAGTGCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCCATATTGAGTACAAAAACTGAACCTATTATTTGTTTTACTGGAAGGCAGGCCCAAGCAAACCTTTCTTTTTCTGGCGTTACTGGAGAGAGCAGTGGTGGAGACTATCAAGATTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCATGGCTTACGCCTTGTCCTGAGAATGACCTGCAATCTGCTAACCGCAGTAATGCTGTTATGCGTTATAAGGAAAAGAAGAAGACGCGCAAGTTTGACAAAAGAGTGAGGTATGCATCTCGGAAGGCAAGGGCTGATGTCAGAAGGCGCGTGAAGGGTCGGTTTGTAAAAGCTGGGGATGCCTATGATTATGACCCTTTGAGCCAAACCAGAAGCTTCTGA 1257 0.4375 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCAEEKISLCQNCDWLGHGTSTSSSTHKRQTINCYSGCPSAAELSSIWSFVLDIPFISESTCEQELGLMSINENSNKSAWIPPENQNVSGSGQATDLPGLDKSWVGTSSIPESSSEPRILDQPAGPANECLPKFYCPAAKCPALYEDEDDNLYGDFNMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGAKDVSAGDSNCQDAVAAESFYVQGSSVGVVNAVQPACSNAASADSILSTKTEPIICFTGRQAQANLSFSGVTGESSGGDYQDCGASSMLLMGEPPWLTPCPENDLQSANRSNAVMRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGDAYDYDPLSQTRSF. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01170 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 406 - -
Seca5g01170 418 CDD Bbox1_BBX-like 5 47 - -
Seca5g01170 418 CDD Bbox1_BBX-like 47 90 - -
Seca5g01170 418 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Seca5g01170 418 Pfam CCT motif 361 403 IPR010402 GO:0005515
Seca5g01170 418 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Seca5g01170 418 SMART bboxneu5 48 90 IPR000315 GO:0008270
Seca5g01170 418 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca5g01170 418 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01170 Seca-Chr5 36484882 36490072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01170 1 418 C2C2-CO-like Transcription Factor Family AT3G07650 56.613 1.20e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca5g01170 CCT 4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01170 - - gmx:100796748 705.671