Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01165 ATGGGCCTGTCAAGTCTCCCAGCACCATCTGAAGGAGTGTTATGTGCACTTCTGGCAAACACTGCCATGTCAATATCCATATTTAAAGGCATTGTTAGGACAATCTTACACATTGTTGGTATCCATGTTTCATCATCCTCCACTTCCTCTCCTTCACCAGATGTCTCTCAAAACCCACCTGAGTCATTTGAATTCCATATCAGTCCCTCAGAAGCTTTCATTGAAGAGTTCAAAAGCAGGACACCAACTATTAGGTTTGACAGTGTTTGTTCAGGCTGCAAACAAGAACAACCTGAACAAGAGTGCTCAGTATGTCTCACTGAATTTGAAGCAGAATCAGAGATAAACCACTTATCTTGTGGCCATCTCTTCCATAAAGCATGCTTGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGAATCCCTTGCTGCCTGAAGATGATGCATAA 462 0.4286 MGLSSLPAPSEGVLCALLANTAMSISIFKGIVRTILHIVGIHVSSSSTSSPSPDVSQNPPESFEFHISPSEAFIEEFKSRTPTIRFDSVCSGCKQEQPEQECSVCLTEFEAESEINHLSCGHLFHKACLEKWLDYWNITCPLCRNPLLPEDDA. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01165 153 SUPERFAMILY RING/U-box 95 149 - -
Seca5g01165 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
Seca5g01165 153 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Seca5g01165 153 SMART ring_2 102 143 IPR001841 -
Seca5g01165 153 Pfam Ring finger domain 101 144 IPR001841 -
Seca5g01165 153 PANTHER - 1 151 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01165 Seca-Chr5 36359037 36359498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01165 1 151 C3H Transcription Factor Family AT2G04240 60.897 3.38e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01165 K16285 - gmx:100786803 251.136