Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01153 ATGTTCACGAAATCGCCGTCTCCTCAATTCTCATCAACCGTTGGTAGGGTTATTCACTCCTGCAACGGATTGCTTTGTGTTAATCACGACTCAGATCTCAACACCAAGCCCCTTTCTCTCTGGAACCCTGCAACCAGACAAATCCGTAAGGTACCACGTAATGGTTTCAACCCTATTGTCAATAATTCCAGAATAGTGAGAATTTCAATTTCTGATGATTGTATGGAGGATAATCGCATAATAGATCATAAGGTTAGAAAGGTTATTAGCGTTGATTGGTATGCGCAACTTCTGTTTGATGAAATGTCAGATATATCTGTGGAGAAGGTGTTTGTTGTTTTGCCTCAAAGAGATGTGGTTTCTTGGACAACAATGATCAGTGGTTACTCTCATGATGGGTATTTCCAGGAAGCATTGGAACTGTTTGTACAGTTGGAAGGTCTAGGATTAGAGCCAGATGAGGTCACATTTGTAGCACTTTTATGTGCTTGTGGTCATAGTGATTTCGTTGATATGTTGCTTGATTTGGAGAAGCTGCGCTCCCTCTCTTGTCTCGCGTTCTTTGTTTCTCAGAAATTCGCTTCTGAATTGAATCAGAAAATGGATACATCAAATCCTGTTGTCTTTTTCAATGCAAAACTATTACACTTCTATGTTGGAAGAAGGGTTCGGGCAGTGATGCAGGTTATGCGATCAGAAGGTGTATCTGTTATTGGAAAATCCACGGATGAGAAGCAACTAGTTGTAAAAGAATCTCCACCACCTGCTCCTCTTACAACTTTTGTAGAAGCCATCACTGGTTATGGTCTTGATGGTGTCCTGGTTGCAATGGCAAGAAATTTGGCTGGTGATGATAAACCAGGGGCATTTCATGAGAAGTTCAAAAAGATAATTTTGTTTTCTGGAAATGATTATCTAGGCTTGAGTTCCTATCCGACTATTGGAAGGGCTGCTGCAAAGGCAGCTCAAGAACATGGAATGGGACCAAGGGGTTCTGCTCTTATCTGTGGATATACCAATTATCACAGGAAACTTGAATCCAGCTTGGTAGATTTGAAAAAGAAAGAGGATTGCCTTTTTTGTCCCACGGGGTTTGCTACCAATATGGCCTTGATGACAGCAATAGGAAGTTTTGGTTCTCTCTTAGCTGGGAATAACATACCTTCAGATGATGAAACAATTTTTGTCTTTTCTGATGCAATAAACCATGCGTCAATAATTGATGGTGCTTATGACTTTACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAAAACAGAACAATGACTCTTGCCAACTTTTATGAAGATCACTTTTATTTTGTTGAGCTCCTCTCTTGTTTTCAAGTTGGTATTGGTTGA 1380 0.4051 MFTKSPSPQFSSTVGRVIHSCNGLLCVNHDSDLNTKPLSLWNPATRQIRKVPRNGFNPIVNNSRIVRISISDDCMEDNRIIDHKVRKVISVDWYAQLLFDEMSDISVEKVFVVLPQRDVVSWTTMISGYSHDGYFQEALELFVQLEGLGLEPDEVTFVALLCACGHSDFVDMLLDLEKLRSLSCLAFFVSQKFASELNQKMDTSNPVVFFNAKLLHFYVGRRVRAVMQVMRSEGVSVIGKSTDEKQLVVKESPPPAPLTTFVEAITGYGLDGVLVAMARNLAGDDKPGAFHEKFKKIILFSGNDYLGLSSYPTIGRAAAKAAQEHGMGPRGSALICGYTNYHRKLESSLVDLKKKEDCLFCPTGFATNMALMTAIGSFGSLLAGNNIPSDDETIFVFSDAINHASIIDGAYDFTRAALRTSFLASCVSACQNRTMTLANFYEDHFYFVELLSCFQVGIG. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01153 459 Gene3D - 313 411 IPR015421 GO:0003824
Seca5g01153 459 Pfam Replication factor A protein 3 201 265 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g01153 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Seca5g01153 459 Gene3D Tetratricopeptide repeat domain 93 237 IPR011990 GO:0005515
Seca5g01153 459 NCBIfam pentatricopeptide repeat 120 154 IPR002885 -
Seca5g01153 459 Pfam PPR repeat family 117 164 IPR002885 -
Seca5g01153 459 SUPERFAMILY PLP-dependent transferases 295 411 IPR015424 -
Seca5g01153 459 Gene3D Aspartate Aminotransferase, domain 1 295 312 IPR015422 GO:0003824
Seca5g01153 459 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 250 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01153 Seca-Chr5 35911526 35912989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01153 201 265 Core DNA Replication Machinery Family AT4G18590 61.538 1.57e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01153 K00652 - gmx:100820189 223.016