Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01144 ATGGATCGGGAATGGGGTTCAAAGCCCGGGAGCGGTGGCGCCGCCTCGGCTCAGAACGAAGCCATCGACCGTCGAGAGCGTCTCCGGAGATTGGCCCTCGAGACCATTGATCTCGCCAAAGATCCCTATTTCATGCGCAATCATCTTGGAAGCTACGAATGCAAACTCTGCCTCACTCTTCACAACAACGAGGGCAACTATTTGGCCCACACGCAGGGCAAGCGCCATCAGACCAATTTAGCCAAACGTGCAGCTCGCGAGGCTAAAGACGCTCCCGCTCAACCTCAACCTCACAAGCGCAAAGTCTCTGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGCTACCGGGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTCTGTTTCAGATTGAATATCCTGAGATTGAAGACAATATGAAGCCAAGGCACCGATTCATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTTTTATTTGCTGCGGAACCATATGAAATAGTTGCTTTCAAGGTACCTAGCACAGAGATTGATAAGTCAACTCCAAAGTTTTTCTCACATTGGGACCCAGACTCAAAGATGTTCACACTGCAGTTGTATTTTAAATCCAAGCCACCAGAGGCAACCAAACCACAGCCTGCCTCTACAGCCAATGGTACAGCAGCACCAGGTGTTCCACCTAGGCCTTTGCCGCCGCCACCCCAAGCTCCACCACCACCACCTCCTCCTCCACAAGGGCTACCTCCTGGTGCACCTCCTCCCAGAGCTCTTCCACCTCCATTACCAGGATCGTTGCCACCTCCACCTCCAATGGGAGTAAATGGTCCTAGACCTGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCACCCCCTGTTGGCAGTGGCACAGCAAGTTTCAACATGGTTTCAAGGCCTCCATTAATGCCACCTCCGCAAGGACCTCAGTGA 978 0.5174 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDNMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEATKPQPASTANGTAAPGVPPRPLPPPPQAPPPPPPPPQGLPPGAPPPRALPPPLPGSLPPPPPMGVNGPRPAPPGGMPSIPPPPPVGSGTASFNMVSRPPLMPPPQGPQ. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01144 325 Gene3D - 93 218 - -
Seca5g01144 325 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 309 - -
Seca5g01144 325 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Seca5g01144 325 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Seca5g01144 325 MobiDBLite consensus disorder prediction 213 325 - -
Seca5g01144 325 FunFam Splicing factor 3a subunit 2 94 218 - -
Seca5g01144 325 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Seca5g01144 325 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g01144 325 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Seca5g01144 325 MobiDBLite consensus disorder prediction 233 304 - -
Seca5g01144 325 Pfam Zinc-finger of C2H2 type 52 76 - -
Seca5g01144 325 SMART CactinC_cactus_3 89 217 - -
Seca5g01144 325 Gene3D Classic Zinc Finger 46 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01144 Seca-Chr5 35057689 35061396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01144 1 228 C2H2 Transcription Factor Family AT2G32600 89.912 1.58e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01144 K12826 - gmx:100818114 451.055