Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01141 ATGAGAAGAAAGAACGTTGGCGGGCGTAGGCGTACGCCTTCTGCCAATGTTACTCCCCTCCCCGCCATTCCTCTCTTCTACACTGCCCAGGACGAACACACCGCAGCCGTCTACGATAGCGAGAGTGACGACGACAACAACGATGACGACCTCAACCCACACGTTCCAGTGTCCGATTTTATTGACCACGAACACATCCCCGAACCCGAACCTGCAGATTTGCTTGACGAGAACATTTGCATTAGTTGCAACAAAGGCGAGGGAGCATTGTTGATTTGTAGCGAAAGAGGTTGCCCCATTGCCGTCCACGTCAGCTGCATCGGTTCCGAACCTAAATTCGATGCTTCTGGAAACTTCTACTGCCCCTACTGCTGGTACAAGCGGGCCGTGAACAAGTGTCAAGAACTGAGGGAAAAGGCCATGATCGCAAAACAAGCATTATCAAGCTTTTTGGATAATAAAAGCCAAACGGTGCGTAAAGATGAGAAAGAGCCTCTTGCTGAACCGGCATTCCCTGAACGCACTAACCCGGTTCAAGATTCCCTGAACCGAGATGAGCCGAATGTTTTGCAAACGCGTGAAACCGGAGGTACGGAAAGAAAAGAATGCTTTGAAACAGCGCGGAAGGAGAAAGGAAAGGTTTCTGCGACGGGTAGTTCCGTGAGCGAAACTAAAGATTCCAGTTCTGTTCCGAAGAAAGGCCATGCCAAACGGAAGGTTGAAAAGAAAGTTGCTTCTGTGAAAAAATCGTTGTTACGGGAGCATAACAATGGTGATGTAGATGAGGAAGTTACCAGCTCCAGAACTTCAATACAATCACAGAGGTCGCCTAAGCAAGTCATGAAGCGGACTTCGCTGACTGGAAAGCGTAAGAGATTGCATTGGACTGCTGAAGAAGAAAACGCTCTCAAGGAAGGAGTGTTAAAGTTCTCAACGGGAAATCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTATTTGATAAGACTCGTACTCCTGTTGATCTTAAGGATAAATGGAAGAACATTGTCTCCAAGGAAGGATGCAAGTAG 1062 0.4736 MRRKNVGGRRRTPSANVTPLPAIPLFYTAQDEHTAAVYDSESDDDNNDDDLNPHVPVSDFIDHEHIPEPEPADLLDENICISCNKGEGALLICSERGCPIAVHVSCIGSEPKFDASGNFYCPYCWYKRAVNKCQELREKAMIAKQALSSFLDNKSQTVRKDEKEPLAEPAFPERTNPVQDSLNRDEPNVLQTRETGGTERKECFETARKEKGKVSATGSSVSETKDSSSVPKKGHAKRKVEKKVASVKKSLLREHNNGDVDEEVTSSRTSIQSQRSPKQVMKRTSLTGKRKRLHWTAEEENALKEGVLKFSTGNQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIVSKEGCK. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01141 353 ProSiteProfiles Myb-like domain profile. 287 347 IPR001005 -
Seca5g01141 353 MobiDBLite consensus disorder prediction 195 212 - -
Seca5g01141 353 Pfam Myb-like DNA-binding domain 294 346 IPR001005 -
Seca5g01141 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 166 IPR013083 -
Seca5g01141 353 CDD SANT_TRF 295 347 - -
Seca5g01141 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 287 351 IPR017930 -
Seca5g01141 353 MobiDBLite consensus disorder prediction 213 227 - -
Seca5g01141 353 MobiDBLite consensus disorder prediction 263 283 - -
Seca5g01141 353 ProSitePatterns Zinc finger PHD-type signature. 80 124 IPR019786 -
Seca5g01141 353 MobiDBLite consensus disorder prediction 176 194 - -
Seca5g01141 353 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 32 350 - -
Seca5g01141 353 Gene3D - 283 348 - -
Seca5g01141 353 SMART sant 291 349 IPR001005 -
Seca5g01141 353 SUPERFAMILY FYVE/PHD zinc finger 75 131 IPR011011 -
Seca5g01141 353 MobiDBLite consensus disorder prediction 245 262 - -
Seca5g01141 353 SMART PHD_3 79 125 IPR001965 -
Seca5g01141 353 Coils Coil 126 146 - -
Seca5g01141 353 MobiDBLite consensus disorder prediction 36 55 - -
Seca5g01141 353 MobiDBLite consensus disorder prediction 156 291 - -
Seca5g01141 353 SUPERFAMILY Homeodomain-like 290 348 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01141 Seca-Chr5 34952865 34957694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01141 292 346 Single Myb Histone (SMH) Gene Family AT3G49850 53.571 1.30e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g01141 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01141 - - lja:Lj0g3v0116239.1 351.673