Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01135 ATGATATGCTTCTATTTAGTCTATTCTCTTCATTCCTCTTTCTCTACCAAAGCTATTGTTCAATATCATAATCATAATGGCAATCGTCCTGCTGTTTTTCACACAATCAACAGCCTTTGTGGGAGATGTCAAAATTGGAGGCTAAGCGTGAAGCTTCTGAGGGTGTGGAACATGTCATCCCTTGCCAAACCGAATGACCCATTTGCGTTGGAAATGGTTTTTGTTGATGAAGAGGGGGGAAGGATCAAAGCTACGGTGTCGAAGCACCTCATGCTGAAAGTTTCCCAAGCTGCGGTGGAGGGGCATGTGTATAAGCTGTCTAATTTTGGGATGACGGCTAATGGCGGAAAATTTCGAGCTGCTAACCACGAATTTAAGCTTGTCTTTAATGGAGGCACAAAGTTGGTTCCCTGCCCAAATGTGTCCATACCTTTGTCCGGTTTATCATTGCTCAAGACTTCGGACATAAACAAAACAAATGGATTTTCAGATTTCCTTATGGATTTTATGGGAGTCCTCACGGCTGTATCAGAGGAGATCACGATGAACAAGCAAGGCAGGGAGACAAGGCTAATGTTGCTGGATTTAGTTGATGAAATGGGATCAATTAGGTGTGTTGTCTTTGGTGATATGGTTGACAACGTTGCTGGATTCCTTACTGCTCCAAGAAACGGACTTCCCGTCGTCATCATCCAATTCGCAAAAGTTAACACCTATAAGGGCCAAGTAGGCATTCAAAATGTGATGAATGCAACCAAAATATCTTGGAATCCTGACATCCCAGAGGCCATTGAGTTCAAGAATGGGCTTGCTGTCCATGAAATCGAGACTGATCTTGTCATTGGCTCCATTAGTGACAGATCTCAATAG 870 0.4322 MICFYLVYSLHSSFSTKAIVQYHNHNGNRPAVFHTINSLCGRCQNWRLSVKLLRVWNMSSLAKPNDPFALEMVFVDEEGGRIKATVSKHLMLKVSQAAVEGHVYKLSNFGMTANGGKFRAANHEFKLVFNGGTKLVPCPNVSIPLSGLSLLKTSDINKTNGFSDFLMDFMGVLTAVSEEITMNKQGRETRLMLLDLVDEMGSIRCVVFGDMVDNVAGFLTAPRNGLPVVIIQFAKVNTYKGQVGIQNVMNATKISWNPDIPEAIEFKNGLAVHEIETDLVIGSISDRSQ. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01135 289 SUPERFAMILY Nucleic acid-binding proteins 32 142 IPR012340 -
Seca5g01135 289 CDD RPA1_DBD_B_like 168 267 - -
Seca5g01135 289 CDD RPA1_DBD_A_like 47 134 - -
Seca5g01135 289 Gene3D - 32 138 IPR012340 -
Seca5g01135 289 Pfam Domain of unknown function DUF223 71 142 IPR003871 -
Seca5g01135 289 Gene3D - 142 276 IPR012340 -
Seca5g01135 289 SUPERFAMILY Nucleic acid-binding proteins 149 271 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01135 Seca-Chr5 34884972 34886448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01135 9 267 Core DNA Replication Machinery Family AT2G06510 24.364 4.25e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01135 - - lja:Lj6g3v0884310.1 231.491