Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01128 ATGTTGAAGTATGTGGTGGAAGGTTGTGGTGAAACGAAGTGTTTGGGACTTGGAGGTGTTGGTTCTGTGCGACGTGGTGGTCCGATGGCTGCTCGCGCGGTGGTACAGGGTGGATGCTGTCGTATCTCCCGCGCGTGCAGCAGTGACTTGGTGTTGCGGATCCATCCGCGGTGGAACAGTGCTGGCTATGGTGGCTATTCCCAAATTCTCCCATTCCTCTCATCACGCCTCCAAGCCCTAAAGTTTCTGTTCTTCTTCTTCCTCAAGGCCAGTCTCCAGCCGCCGACGTCGTTCATACCTGTTGTGGGGGACGATTCTGCTGCAGCGTTCTTCATGTTCTGCGTTCTGAGGTCGTGCGCCGTCGTTCTGAGGTTGTGCGCCGTCGTTCGAGGCTGTGCGCGTGTGCTGTTTGCGAATCTGTGTTTCGTTCGTTGCGTTCAGAGTTTCAGGTTGAATGAGGACATGATTGAGACACTCTTCATGGTAAATAATTCCAATGGAAATTATGGTTTGGCTTTTAGAGATAATGCTCGGCAACAAGTAAATCATTCTTCTCCAATGCCACTGGAAAATAGGGTGCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTCGGGCACTGAATGTAACTATTGATGAAGTTTGTGAAGCCCTCAGGGAAGAAAATGGAGACCGCATAGCTGGATTTATTTTAGAACCTATCCAAGGTGAAGCTGGGCTTGGAATGGTGCTGCATCTTTATTTTTCCACTGATCTAATTGCACACACAATAAGAAAGGAAAATGATTCAATTCTACATTTGGATTGCATTTTTCCCAAAGCTCGTCCTATCTTGCTAAATGGGGCCCTCAGAAAGAGGAAGCGTGTTGTCCCTCCATTGGCTCTGGATTCTCTATTGAGAGTCACTTTCCCTCTTCCTTCAGCTCGGGTCAAGGCCACCGAAAGACTTGAAGCTGTATATCCAACATTAAAGGAGGTAGCCCTTGCAGGGTCCCCTGGAAGCAAAGCAATAAAGCATCTTGCTCAACAAATATTAAGCTATGCAATTAAAGCTGCAGGAGAAGGTGATGTCAAGTTAATGTAG 1089 0.4766 MLKYVVEGCGETKCLGLGGVGSVRRGGPMAARAVVQGGCCRISRACSSDLVLRIHPRWNSAGYGGYSQILPFLSSRLQALKFLFFFFLKASLQPPTSFIPVVGDDSAAAFFMFCVLRSCAVVLRLCAVVRGCARVLFANLCFVRCVQSFRLNEDMIETLFMVNNSNGNYGLAFRDNARQQVNHSSPMPLENRVLDPKKSQNIAILLRALNVTIDEVCEALREENGDRIAGFILEPIQGEAGLGMVLHLYFSTDLIAHTIRKENDSILHLDCIFPKARPILLNGALRKRKRVVPPLALDSLLRVTFPLPSARVKATERLEAVYPTLKEVALAGSPGSKAIKHLAQQILSYAIKAAGEGDVKLM. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01128 362 SUPERFAMILY Formin homology 2 domain (FH2 domain) 150 228 - -
Seca5g01128 362 Gene3D Formin, FH2 domain 136 240 IPR042201 -
Seca5g01128 362 Pfam Formin Homology 2 Domain 148 226 IPR015425 -
Seca5g01128 362 PANTHER TRANSMEMBRANE PROTEIN 214 252 358 IPR019308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01128 Seca-Chr5 34424671 34429413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01128 148 234 FH2 protein (formin) Gene Family AT2G43800 55.172 3.28e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01128 - - lja:Lj2g3v2560090.1 147.517