Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01118 ATGATCCTGTGCACGGCGATCAACCACAACCTATGCGATGGCACCGGGGCCTCACAGTTTATACATGCATGGGCCCAACTCACCAAGCAACCCAACACCGAATTGACAATAATACCCTTTCACGGGAGACACGTGTTAAAAAGTCGAGATCCCCCACAAGTAAAGTTCCCTCACCCGGGATACACTAGAACAAACCCCTCCCATCAAGTGAACATGCTCGAGTGGATACTCTCCCAGCCACTAGTTGCCACATCATTTACCTTTGGACCCACCCATGTGCTTGGCTTGAAGAAGCAGTGTGAGCCGTCGTTGAAGCGCATCACCACCTTTGAAGTGGTGGTTGCACACACGTGGCGCTCATGGGTTCGATCACTAAACCTGTCCTCCACTCTCGTTACGAAGCTCCTTTTCGCGGTCAATATTAGGGAAAAAATGAAACTCCCAGAAGGGGGATCTGCATCCGTCGCTCGAAAGAGGACAGTGCAGGCCAAGAGTAGTGTGGTCAATGTTGACTTAGTAAAGTCAACCCTCCTTGCTTGA 540 0.5074 MILCTAINHNLCDGTGASQFIHAWAQLTKQPNTELTIIPFHGRHVLKSRDPPQVKFPHPGYTRTNPSHQVNMLEWILSQPLVATSFTFGPTHVLGLKKQCEPSLKRITTFEVVVAHTWRSWVRSLNLSSTLVTKLLFAVNIREKMKLPEGGSASVARKRTVQAKSSVVNVDLVKSTLLA. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01118 179 Pfam Transferase family 1 146 - -
Seca5g01118 179 Gene3D - 1 63 IPR023213 -
Seca5g01118 179 Gene3D - 67 168 IPR023213 -
Seca5g01118 179 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01118 Seca-Chr5 34009254 34009965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01118 3 155 Monolignol Biosynthesis Gene Families AT5G48930 29.560 2.72e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01118 - - aip:107645267 231.876