Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01090 ATGAAGAGGAGCAGAGAAATGAAGAAGAGTTCAGAGATAAGCTCTGTTATTGAAGAGCTGTCTATGCTGGTTGTTGTTAAACCTGGAGGAAATCATGACGAGGCTACACACATCCCCACCAAGCCTTTCATATCTATATGTCACTTGGTTCTACAAGTTCTTGGTGGTTTTACTAACTCCCTCTCTTTATTTTCAAACATGAATAAGGTGATATCATTATCCACAACAATGGTTGCAATGAACAGAAGGTCAAAAGAGGACTTTGGTCCTGAAGAAGATGAAAAGCTTATCAACTATATCACAACTTATGGACATGGTTGCTGGAGCTCTATCCCAAAACTTGCAGGCTTACAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTGTCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAACGCTCATTATTGAACTTAATAGTATTCTAGGCAACAGGTGA 480 0.3917 MKRSREMKKSSEISSVIEELSMLVVVKPGGNHDEATHIPTKPFISICHLVLQVLGGFTNSLSLFSNMNKVISLSTTMVAMNRRSKEDFGPEEDEKLINYITTYGHGCWSSIPKLAGLQRCGKSCRLRWINCLRPDLKRGSFSPQEATLIIELNSILGNR. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01090 159 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
Seca5g01090 159 PANTHER MYB DOMAIN PROTEIN 55 90 159 - -
Seca5g01090 159 SMART sant 84 134 IPR001005 -
Seca5g01090 159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Seca5g01090 159 FunFam MYB transcription factor 82 138 - -
Seca5g01090 159 CDD SANT 90 130 IPR001005 -
Seca5g01090 159 Gene3D - 84 138 - -
Seca5g01090 159 Pfam Myb-like DNA-binding domain 86 132 IPR001005 -
Seca5g01090 159 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01090 Seca-Chr5 32738573 32739459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01090 88 159 MYB Transcription Factor Family AT3G13890 87.500 3.27e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g01090 Myb_DNA-binding 3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01090 K09422 - tcc:18596157 143.665