Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01089 ATGGTAACTGTTCGATGTGGGCACTGCACAAACCTATGGTCCGTGAACATGGCCGCAGCGTTTCAGTCACTGTCATGGCAAGATCTTCAGGCATCAGGGTACTACTCCAAACCAGAGTATAGGATTGACACAGGTTCAACTTCTAAATCCAACAAGATTCAAATGCGTCCACCCACTTCGCATGTAACTCAGCAAAGGGTGGTGAACCGGCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAAAGGATAAAGGCAAATAATCCTGAAATCAGTCACAGGGAAGCATTCAGTACGGCTGCCAAGAACTGGGCACATTTCCCTCATATTCATTTTGGGCTGATGTTGGAAAGCAACAATCAAGCTAAGATGGAGAATGGCAGTGAGAAGCAAGTGATGTCAAGGGCTGCGCTGTTGAACAAATGA 453 0.4636 MVTVRCGHCTNLWSVNMAAAFQSLSWQDLQASGYYSKPEYRIDTGSTSKSNKIQMRPPTSHVTQQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENGSEKQVMSRAALLNK. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01089 150 Gene3D High mobility group box domain 60 143 IPR036910 -
Seca5g01089 150 Pfam YABBY protein 1 123 IPR006780 GO:0007275
Seca5g01089 150 SUPERFAMILY HMG-box 66 116 IPR036910 -
Seca5g01089 150 FunFam axial regulator YABBY 5-like 61 119 - -
Seca5g01089 150 CDD HMG-box_SF 77 113 - -
Seca5g01089 150 PANTHER PROTEIN YABBY 6-RELATED 1 133 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01089 Seca-Chr5 32725472 32729849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01089 1 133 C2C2-YABBY Transcription Factor Family AT2G26580 76.866 1.10e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca5g01089 YABBY 1.2e-51 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01089 K25796 - gmx:100804731 267.314