Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01086 ATGAGGCGTTGGATCTGCGGTGGCGTGAGGGGTTGGATCGGCGGTTTCAGCGATGTGGAAGAAGCCTCCCCTCCTTCCTTCTCTCTTCACACCCCAAGCACACGGTGGCGAAGCATAAGTGTGAAAACGGCGACAGGGGCTTGGCAGAAAGCATCTCTTCGGTTCAGAGCAAAAGAGGGGAAGGAAGGATGTGCGGTGGTGGCGGCAAGAAACTCCGGGCAAGCTTCATCTCGACAACGTGTTGTGGTTCCCTCACATTCGCCCTTCATGGCGGTGCCTATGCCCAACGCGCTGCCGTTCCCTCTGGCTGACGAGGTCCCTGCTGATGGAATTCTGATCACGGGTCACTCTCTTGCAATTGATGAATCAAGCATGACGGGGGAGAGCAAAATTGTCCATAAGGATTCTAAAGATCCTTTCCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTAAAAAATGAAAATCATGCAAAGTATGCTTTTAAAAGCCTTGCAAAATGTGCTGCATTGATGTGCAGGGAAGTGGACAGACTGGAGACTAAGAGTAATGTTCTTCTTGCATCCATCGAGAACATGCAATATGCTGTAACATTAGATGTCTTGCATATGGCCGTGATGGGATCTTCTGTCACGGAGATGGATAGACCTGTGTCAAGTGCAATATTTATTGTAAACTCTGATAAGGTTAGAATAGATCCTAGAAATATGGAGATTGATCTTGATAGTTTAATGTATGGCAAACTTCCTGAGCTAACTGAGGAAGATTTGAAAAAACAAGAAGGAGATTACATTTATCGTTATCACTATGATGGTGGAGGAGCAACTCAAGTTTGGCTGGGCTCTGGCAGACAAGCTACCAAACAAGCCCTGCAAGATATTTATCTGCCTTTCATGTTGGAGGCTCTAGCTCATCCATTCTTTGATGAGCTGCGAGATCCAAATACCCGGTTGCCAAATGGGCGTTTCCTTCCACCGCTATTTAACCTCAAAGCCAATGAACTTAAGGGAGTATTAACTTGGTGA 1035 0.4676 MRRWICGGVRGWIGGFSDVEEASPPSFSLHTPSTRWRSISVKTATGAWQKASLRFRAKEGKEGCAVVAARNSGQASSRQRVVVPSHSPFMAVPMPNALPFPLADEVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLKNENHAKYAFKSLAKCAALMCREVDRLETKSNVLLASIENMQYAVTLDVLHMAVMGSSVTEMDRPVSSAIFIVNSDKVRIDPRNMEIDLDSLMYGKLPELTEEDLKKQEGDYIYRYHYDGGGATQVWLGSGRQATKQALQDIYLPFMLEALAHPFFDELRDPNTRLPNGRFLPPLFNLKANELKGVLTW. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01086 344 PANTHER CATION TRANSPORTING ATPASE 104 209 - -
Seca5g01086 344 Gene3D - 101 171 - -
Seca5g01086 344 SUPERFAMILY Calcium ATPase, transduction domain A 103 154 IPR008250 -
Seca5g01086 344 Pfam E1-E2 ATPase 104 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01086 Seca-Chr5 32546894 32552246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01086 92 155 Primary Pumps ATPases AT3G21180 73.438 7.15e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01086 - - tpra:123920049 146.747