Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01085 ATGCTAGCACATCAGTCGATTATTGGAAAAAAGAAAATATATTATGATAAACATGATGGCGAGACACTCATATACGTTGATAGCGATAAGGAATCGACAAAGTCTGATGACATTAAACGTGACTTTAGTGTGGTTGAAGATCAAATTTTATGGATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTGAGTATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAGGAGAGGTATAAATTTCTTAGGGAAAAGAATATGAGGAGTTTGGACCTACATTTTAAAGATTTTGAAGAACCTGAATCTATATTAGGCATATCTTTGGATAAAAGCTTGAATGATGCATTGGCTACTTTTGATAGCCTTTTCTGCCAGCAGTGCATTAAACCTCTGGAAGCGCAAGTTGATGGGAAGCTAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATATGAAGGGAGTAGAAATATTTGGAAGGAACAGTTGCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATTGAAGTAGCTAGCTACATGTATGCTGGAGAAGTGTCAGTGCGTGATAGTTCAACCATAAACAAAAGTGGACAAGTTGATGCAGAGTTTGAAGACCGAGAGATAGCATCAGGGTCAAGGGTACGGCGAAAAACGCACAAAATTATGAAGTTTAAATATTCATCGAAGTTTCCTGGCCTCCCATCTACAAGGAAAGGAATTACTATTGGGAAATGTGAAACTTACAAGCAGTATACACCTTGTGGATGTCAGGAAATGTGTGGGAAGCAATGTCCTTGTCTTCATAATGGATCTTGCTGTGAAAAATATTGTGTTCAAAGCTCTGCAAAAATCGGTTCAGAGGATGTTATTGTGCTAAGAGTCAATGTAGAAGTCGACAGTGTCCATGCTCTGCAACAGAACGAGAATGTGACCCAGATTTGTGGTGGTGGTTCGTTAGGAGAGCCACCTCGTCATGGTGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTTGCAAAATCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGTTAACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAAATCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTCTTTATAATGTACGTTCTTGATACTTATCGCAATGGAAACAAGCTGAAATTTGCTAAGCACTCAGAAAAACCCAACTGTTATTCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTATGATTATAGCTACGGTCCAGAGCAAGCACCAACATGGTTTTAA 1440 0.391 MLAHQSIIGKKKIYYDKHDGETLIYVDSDKESTKSDDIKRDFSVVEDQILWMAFEEHGFTEEVLSIVSKFVNGTVLEIQERYKFLREKNMRSLDLHFKDFEEPESILGISLDKSLNDALATFDSLFCQQCIKPLEAQVDGKLSFSNWKPLEKDLYMKGVEIFGRNSCLIARNLLSSLKTCIEVASYMYAGEVSVRDSSTINKSGQVDAEFEDREIASGSRVRRKTHKIMKFKYSSKFPGLPSTRKGITIGKCETYKQYTPCGCQEMCGKQCPCLHNGSCCEKYCVQSSAKIGSEDVIVLRVNVEVDSVHALQQNENVTQICGGGSLGEPPRHGDGQCGNMRLLLRQNQRILFAKSDVEGWGAFLKNPANKNDYLGELTGELISHLEAEKRGKMYDRAKSSFLFNLNDQASVFIMYVLDTYRNGNKLKFAKHSEKPNCYSRIMLVGGDHRVGIFAKERIEAGEELFYDYSYGPEQAPTWF. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01085 479 SMART set_7 348 475 IPR001214 GO:0005515
Seca5g01085 479 Gene3D SET domain 250 471 IPR046341 -
Seca5g01085 479 Pfam SET domain 360 468 IPR001214 GO:0005515
Seca5g01085 479 SUPERFAMILY SET domain 254 472 IPR046341 -
Seca5g01085 479 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 132 IPR045318 GO:0006338|GO:0042054
Seca5g01085 479 CDD SET_EZH 348 470 - -
Seca5g01085 479 ProSiteProfiles SET domain profile. 348 469 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01085 Seca-Chr5 32469590 32473167 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01085 354 472 C2H2 Transcription Factor Family AT2G23740 26.923 5.14e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g01085 SET 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01085 - K11430 cam:101494145 478.789