Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01082 ATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTGAGTATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAGGAGAGGTATAAATTTCTTAGGGAAAAGAATATGAGGAGTTTGGACCTACATTTTAAAGATTTTGAAGAACCTGAATCTATATCAGGCATATCTTTGGATAAAAGCTTGAATGATGCATTGGCTACTTTTGATAGCCTTTTCTGCCAGCAGTGCATTAAACCTCTGGAAGCGCAAGTTGATGGGAAGCTAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATCTGAAGGGAGTAGAAATATTTGGAAGGAACAGTTTCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATTGAAGTAGCTAGCTACATGTATGCTGGAGAAGTGTCAGTGCGTGATAGTTCAACCATAAACAAAAGTGGACAAGTTGATGCAGAGTTTGAAGACCGAGAGATAGCATCAGGGTCAAGGGTACGACGAAAAACGCACAAAATTATGAAGTTTAAATATTCATCGAAGTTTCCTGGCCTCCCATCTACAAGGAAAGGAATTACTATTGGGAGATGTGAAACTTACAAGCAGTATACACCTTGTGGATGTCAGGAAATGTGTGGGAAGCAATGTCCTTGTCTTCATAATGGATCTTGCTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCAAAAATCGGTTCAGAGGATGTTATTGTGCTAAGAGTCAATGTAGAAGTCGACAGTGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATGTATGTCGAAATTGTTGGGTTAGAACAAATGTTTTAAATATGACAATCTTTTTTTTATACAGTTGTGGTGGTGGTTCATTAGGAGAGCCACCTCGTCATGGTGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGTTAACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAAATCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTCTTTATAATGTACGTTCTTGATACTTATCGCAATGGAAACAAGCTGAAATTTGCTAAGCACTCAGAAAAACCCAACTGTTATTCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTATGATTATAGCTACGGTCCAGAGCAAGCACCAACATGGTTTTAA 1353 0.3925 MAFEEHGFTEEVLSIVSKFVNGTVLEIQERYKFLREKNMRSLDLHFKDFEEPESISGISLDKSLNDALATFDSLFCQQCIKPLEAQVDGKLSFSNWKPLEKDLYLKGVEIFGRNSFLIARNLLSSLKTCIEVASYMYAGEVSVRDSSTINKSGQVDAEFEDREIASGSRVRRKTHKIMKFKYSSKFPGLPSTRKGITIGRCETYKQYTPCGCQEMCGKQCPCLHNGSCCEKYCGCSKLCKNRFRGCYCAKSQCRSRQCPCFAAERECDPDVCRNCWVRTNVLNMTIFFLYSCGGGSLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANKNDYLGELTGELISHLEAEKRGKMYDRAKSSFLFNLNDQASVFIMYVLDTYRNGNKLKFAKHSEKPNCYSRIMLVGGDHRVGIFAKERIEAGEELFYDYSYGPEQAPTWF. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01082 450 CDD SET_EZH 319 441 - -
Seca5g01082 450 SMART CXC_2 241 278 IPR033467 -
Seca5g01082 450 FunFam Putative histone-lysine N-methyltransferase EZH2 207 442 - -
Seca5g01082 450 ProSiteProfiles SET domain profile. 319 440 IPR001214 GO:0005515
Seca5g01082 450 SUPERFAMILY SET domain 206 443 IPR046341 -
Seca5g01082 450 ProSiteProfiles CXC domain profile. 193 292 IPR026489 -
Seca5g01082 450 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 93 445 IPR045318 GO:0006338|GO:0042054
Seca5g01082 450 Gene3D SET domain 207 442 IPR046341 -
Seca5g01082 450 Pfam SET domain 331 439 IPR001214 GO:0005515
Seca5g01082 450 Pfam CXC domain 245 276 IPR041355 -
Seca5g01082 450 SMART set_7 319 446 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01082 Seca-Chr5 32285130 32288167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01082 308 443 C2H2 Transcription Factor Family AT2G23740 25.850 5.00e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g01082 SET 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01082 - K11430 gmx:100795451 523.087