Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01080 ATGTCTAGTATTCACGTAAGTTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAGAACACAATCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACAGTGCCAATGATGCTATGTTGCATGTTGCATGTGGGTGTCACCAAAACTTTCACTGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATATGAATGCAACAAGGTCGTCACTTGTGGGCCCAATTGTGAAATTCTACCCATCAGGCCCAGAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACACCGGAGCAAAGGAATCAATTGCTGACTTTTGCTGAGGGGTTTGGGTGGAAACCTCAAATGGAAAACAAGGAAGAAATCCAGCGATTCTGCTTAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCGAGCAACACGCAAGAATTAA 504 0.4405 MSSIHVSLSGIVFEQKVVYKECRHNLAAEHNLVFHDGCLEFVKDSANDAMLHVACGCHQNFHCRHIVYNPIALPQVTDNNMNATRSSLVGPIVKFYPSGPEPPMKKRRTRFTPEQRNQLLTFAEGFGWKPQMENKEEIQRFCLEMGITHKILMVWLNNNRHRATRKN. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01080 167 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 162 - -
Seca5g01080 167 NCBIfam homeobox domain, ZF-HD class 105 160 IPR006455 -
Seca5g01080 167 Pfam ZF-HD protein dimerisation region 17 65 IPR006456 -
Seca5g01080 167 SUPERFAMILY Homeodomain-like 98 165 IPR009057 -
Seca5g01080 167 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca5g01080 167 Gene3D - 97 165 - -
Seca5g01080 167 CDD homeodomain 105 167 IPR001356 GO:0003677
Seca5g01080 167 ProSiteProfiles 'Homeobox' domain profile. 102 166 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01080 Seca-Chr5 32189152 32189655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01080 6 167 ZF-HD Transcription Factor Family AT1G14440 28.780 2.01e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca5g01080 ZF-HD_dimer 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01080 - - lja:Lj4g3v2313490.1 140.584