Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01049 ATGACCTTCATCGACGACGGCATCGACCTGGACCCGTCGGATTTCGCGTCGTCGGTCCCTCTGAAGAAGGTCCCAAACGGCGACGTATTCGAGGCGTCCCGCGCGGGCGACGTGGAGCGCCTCCGCTACCTGCTGGAGTCGGGCGTGAACGTTAACGCACGTGACCAGTGGGACTCAGTGGCCCTCTACTATGCCTGCCTCGCAGGCCACCTCGACGCCGCTCGCATGCTCCTTGAGAACGGCGCCATCTGCTCCGAACATACCTTCGACGGCGACCGCTGTCACTACGCCGCCCTCAATTTGAAGGTCCGCAAACTACTCAAGGCCTTCGAGGCCCGTCCCCCTCCCTTGGCCCCCCTGCAAGCTTCCTTGCGCGACACCTTCTTGGCCTGCCCCGCAAACTCTTCTAATTCCACTCTTTCCCACTTTCAAATTCCCGGTATTTCATCCACTCAGGGGTCCAGTAGCAGCCACTTTCCTCCGGATGTGGTTTTTATTATCCAAGGAAGACCTATTGAAGCTCACAGAGTCATATTAAGTGCAAGGTCACCCTTTTTCAAGAAAAAGTTTGAGACTATTTGGAAAGAGCGCAGTGAAGTAAGATTGTCACGGGAAAAGTTGTCATATCCTGCACTTTATAGCCTTATACACTTCTTTTATTCAGACCGACTAGAGATTGCTGTGGATGACATGGAAGATCTTGTCAGAATCTGCAAAGTATGCAAATGTGAATCACTACGGAAAATCATCGAGAAAGAAGTAATTCATCAAAAATATGCTGAGTATAAAGCATTGAGAGATGTAGATAATTCCCAGAAACGGTATATTTTACAGGGTCTATCCCTTCCTGAAGAAGATAGACTTCCTGCAGCCTTGCGTCGAATCCTTCTGACTGCCCTTTCAAATTCCACCCATGAAAATGGTCAAGATGATGGAATTGATGAATTGGTAGCTAGTATGGGTTCCATGCAGATGGCTAAATCTCTAGATGATCTTGCTGATGTTTGTGTAAGAGTTGATAGAAAAATTTTCCGTTGCCATAAAGTTATTCTAGCATCAAGGTCAGAATATTTCAAAGCAAGATTGTCACGTATGAAGGATTTTCACGAAGGAAATGATGAATTATCTGTTGACTTCCTTCCTTGTCTTGAAGAACATGACATGAGCAAGGAAGCATTTGAGAAAATGATTGAATATATGTACACTGATGGATTACAGGATATAAATCCAGATCAGGCTGAGGAGATGTTGGATGTTGCTTCTAGATATCTATTGTTTCCTCTTAAGCGTGCAGTGGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCACCGGAGGAACTTTGCCATTGGTTAATACTAGCGGACATGTATGGTGTTTTCAAGATTCGGGAATATTGTCTAGACACCATTGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGGGCAATGCTGTTGACATTGCCTCCACCATCTGGAGACTCATCTCTTCGTACCACTGTTCCAAGCATTCCTGGATCTTCTCTCAATATTGATCAAGGAAACCTTCTTGATGATTTACGTGAGAAATGGCTAGAAATTGAAGCTGCTGAGCTTGACAAAAGGGATGAGAGTGCTTTGCAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTTGCAGAGCAAGAAAAATCATCAGGCAATGCTGATTCAGATGGTAATGATGTCACACCCATGGCTTTTTCCCCAATCACCGATTTAATTTCAGGTGAACAAAAAGAACTGTAG 1776 0.4533 MTFIDDGIDLDPSDFASSVPLKKVPNGDVFEASRAGDVERLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLAPLQASLRDTFLACPANSSNSTLSHFQIPGISSTQGSSSSHFPPDVVFIIQGRPIEAHRVILSARSPFFKKKFETIWKERSEVRLSREKLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLRKIIEKEVIHQKYAEYKALRDVDNSQKRYILQGLSLPEEDRLPAALRRILLTALSNSTHENGQDDGIDELVASMGSMQMAKSLDDLADVCVRVDRKIFRCHKVILASRSEYFKARLSRMKDFHEGNDELSVDFLPCLEEHDMSKEAFEKMIEYMYTDGLQDINPDQAEEMLDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADMYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTVPSIPGSSLNIDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSSGNADSDGNDVTPMAFSPITDLISGEQKEL. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01049 591 ProSiteProfiles BTB domain profile. 333 409 IPR000210 GO:0005515
Seca5g01049 591 SMART BTB_4 333 440 IPR000210 GO:0005515
Seca5g01049 591 SMART BTB_4 161 258 IPR000210 GO:0005515
Seca5g01049 591 SUPERFAMILY Ankyrin repeat 31 108 IPR036770 -
Seca5g01049 591 Pfam Ankyrin repeats (many copies) 31 78 IPR002110 GO:0005515
Seca5g01049 591 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Seca5g01049 591 Pfam BTB/POZ domain 330 436 IPR000210 GO:0005515
Seca5g01049 591 Pfam BTB/POZ domain 158 257 IPR000210 GO:0005515
Seca5g01049 591 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 556 IPR044515 -
Seca5g01049 591 FunFam BTB/POZ domain-containing protein 23 144 - -
Seca5g01049 591 Gene3D - 2 145 IPR036770 -
Seca5g01049 591 FunFam BTB/POZ domain-containing protein 155 277 - -
Seca5g01049 591 CDD BTB_POZ_ZBTB_KLHL-like 332 423 - -
Seca5g01049 591 CDD BACK 444 487 - -
Seca5g01049 591 SUPERFAMILY POZ domain 325 439 IPR011333 -
Seca5g01049 591 ProSiteProfiles BTB domain profile. 161 228 IPR000210 GO:0005515
Seca5g01049 591 MobiDBLite consensus disorder prediction 559 591 - -
Seca5g01049 591 Gene3D Potassium Channel Kv1.1; Chain A 314 472 IPR011333 -
Seca5g01049 591 Gene3D Potassium Channel Kv1.1; Chain A 153 276 IPR011333 -
Seca5g01049 591 SUPERFAMILY POZ domain 156 254 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01049 Seca-Chr5 31143926 31151812 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca5g01049 BTB 1.5e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01049 K10520 - gmx:100812009 957.977