Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01042 ATGTTTCAATGCATAAGTTGTTCGAAGCAGGCTAGGGCGGAGGAAGAAGAAGGTCGTGGGAGTGGGAGTGGCACGCCCAAGAGAAAGGAAGCAGTCAAAAGTCTCACTGCGCAGATAAAGGACATGGTGCTTAGGATTTCAGGTGCTAATAAGTCGAAAGCCAACACTGGGCCAACTTCAGACAGGGGAAAGAAACCCCTGGCTGATTATGAGACCCTGTCTGAAGGGGTTCAATACCGTTATATGGGAGGTGACATGACCCCAGGAAGGACTGAACCAGTAGCAGTTGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCAATAGAGTGGGTGGCTCAGGTGGATCCAGGAGTCCAAATCACATTCGAGACCATTCCTAATGGGGGACATGTTCTCAAGAGAATTCGCTTCAACCGAGACATGTTTGACAGGCACCAAGCTCAAGCATGGTGGGATGACAATTATGACAGGATCATGGAACTTTACAATGTCCAGAGTTTCAACCAAAATTCTATCAACACTTCTCAGAGGGGTAGTAGCCCTGTGGCTACATGGTTAAATTCAACAACAAAGACTCACTACTACCAAAGGTCATCCTCAGGAATCACTTTGGACAACAGCGGTGGTGGTGAAAACTTGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATACAGGAGACTGAATTCAACAATTGCATTGACAATGACTCAGAAAGGATTGAGCAGGATCAGCCTGGGGTGTCAATCACAATCAAGGTGCTTCCTGATGGAACAAAAGAGATTCATCGTGTCAGGTTCAGATATGTTGGTGGAGTATCATGCCCATACATATGTTCAAGGCGGCTGGATCATGGGGTCTTGTTGGTGGGATATGGTTCTGATGGCTATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAATACCTGGGGAGAGAGATGGGGAGAAAATGGATACTACAAGATTTGTAGGGGACAAAATATCTGTGGGGTGGATTCCATGGTTTCTACTGTGGCTGCTGTTCATACCACCACTCAGTAGAATGGATGCTAACCTTGATATATGA 1092 0.4643 MFQCISCSKQARAEEEEGRGSGSGTPKRKEAVKSLTAQIKDMVLRISGANKSKANTGPTSDRGKKPLADYETLSEGVQYRYMGGDMTPGRTEPVAVAQDGLGEEDEAIEWVAQVDPGVQITFETIPNGGHVLKRIRFNRDMFDRHQAQAWWDDNYDRIMELYNVQSFNQNSINTSQRGSSPVATWLNSTTKTHYYQRSSSGITLDNSGGGENLNEGGPSNEAARISNSSIQETEFNNCIDNDSERIEQDQPGVSITIKVLPDGTKEIHRVRFRYVGGVSCPYICSRRLDHGVLLVGYGSDGYAPIRMKEKPYWIIKIPGERDGEKMDTTRFVGDKISVGWIPWFLLWLLFIPPLSRMDANLDI. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01042 363 MobiDBLite consensus disorder prediction 199 221 - -
Seca5g01042 363 ProSiteProfiles BRX domain profile. 108 163 IPR013591 -
Seca5g01042 363 MobiDBLite consensus disorder prediction 1 34 - -
Seca5g01042 363 MobiDBLite consensus disorder prediction 10 26 - -
Seca5g01042 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Seca5g01042 363 Pfam Transcription factor regulating root and shoot growth via Pin3 243 273 IPR013591 -
Seca5g01042 363 Pfam Transcription factor regulating root and shoot growth via Pin3 109 162 IPR013591 -
Seca5g01042 363 ProSiteProfiles BRX domain profile. 243 319 IPR013591 -
Seca5g01042 363 SUPERFAMILY Cysteine proteinases 271 316 IPR038765 -
Seca5g01042 363 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 273 IPR044532 -
Seca5g01042 363 Pfam Transcription factor BRX N-terminal domain 24 49 IPR027988 -
Seca5g01042 363 Gene3D Cysteine proteinases 138 316 - -
Seca5g01042 363 MobiDBLite consensus disorder prediction 46 66 - -
Seca5g01042 363 Pfam Papain family cysteine protease 273 316 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01042 Seca-Chr5 30947489 30950922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01042 1 272 Major Intrinsic Protein MIP AT1G31880 41.379 5.81e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01042 - - ccaj:109789470 229.95