Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01041 ATGCTAGCTGCTTATTCTTCTCCTTCTTTTGCAGGAATTAATACCAAAAAGGCGAAGATGTTTCAATGCATAAGTTGTTTGAAGCAGGCTAGGGCGGAGGAAGAAGAAGGTCGTGGGAGTGGGAGTGGCACGCCCAAGAGAAAGGAAGCAGTCAAAAGTCTCACTGTGCAGGTGGAGCCAGGAGTCCAAATCACATTCGAGACCATTCCTACTGGGGGACATGTTCTCAAGAGAATTCGCTTCAATCGAGACATGTTTGACAGGCACAAAGCTCAAGCATGGTGGGTTGGCAATTATGACAGGATCATGGAACTTTACAATGTCCAGAGTTTCAACCAAATTGCTATAAGCACTTCTCAGAGGTTTGAGGATGAGCAAAGGGGTAGTAGCCCTGTGGCTGCATGGTTAAATTCAACAACAAGGACTCACTACTACCAAAGCTCAGCCTCAGGAATCACTTTGGACAACAGTGGTGGTGGTGAAAACATGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATACATGAGACTGAATTCAACAATGGCATTGACAATGACTCAGAAAGGATTAAGCAGGATCAGCCTGGGGTGTCAATCACAATCAGGGTGCTGCCTAATGGAACAAAAGAGATTCATCGTGTCAGGTTCAGCCGCCAGATATTTGATGATGAAGGTGCCAAGCAATGGTGGGAGGAGAACAGGGAGAGGATTAAAGCAGATGACATGTGA 747 0.4578 MLAAYSSPSFAGINTKKAKMFQCISCLKQARAEEEEGRGSGSGTPKRKEAVKSLTVQVEPGVQITFETIPTGGHVLKRIRFNRDMFDRHKAQAWWVGNYDRIMELYNVQSFNQIAISTSQRFEDEQRGSSPVAAWLNSTTRTHYYQSSASGITLDNSGGGENMNEGGPSNEAARISNSSIHETEFNNGIDNDSERIKQDQPGVSITIRVLPNGTKEIHRVRFSRQIFDDEGAKQWWEENRERIKADDM. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01041 248 Pfam Transcription factor regulating root and shoot growth via Pin3 193 243 IPR013591 -
Seca5g01041 248 Pfam Transcription factor regulating root and shoot growth via Pin3 55 106 IPR013591 -
Seca5g01041 248 ProSiteProfiles BRX domain profile. 193 248 IPR013591 -
Seca5g01041 248 ProSiteProfiles BRX domain profile. 52 107 IPR013591 -
Seca5g01041 248 PANTHER PROTEIN BREVIS RADIX-LIKE 1 57 245 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01041 Seca-Chr5 30935813 30939002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01041 16 59 Major Intrinsic Protein MIP AT1G31880 52.273 2.47e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01041 - - gmx:100785003 185.652