Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01035 ATGCAAGCAGATAATGGCAAATTATTTATTGGTGGAATATCATGGGATACAAATGAAGAGAGACTCAAAGAGTATTTTAGTACTTATGGGGAGGTCATGGAATCAGTGATAATGAAGGATCGAACAACAGGTAGAGCCCGTGGATTTGGTTTCATTGTCTTTTCTGATCCAACTGTTGCTGAAAGAGTGATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTAGGGATGACCAGAACATACTGAGTAGAAACAGTAGCAGCGTACATGGTTCTCCAGGTCCATGCCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTTACAGAGAGTGATTTCAAAAACTACTTTGATCAGTTTGGGACTATAACAGATGTTGTTGTGATGTATGACCATAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGACACAGTCTTACTCAAGACTTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAGCTATCACCAGGACCAAACAACAGCCCACTTCCTGGATATAATAACTATGGTCTTAGTCGGGTCAGTAGCTTCTTAAATGGATTCACTCAAGGATATACTCCAAGTAATGTTGGACTTCAGGTGGATGGTAGATTTAGTCCTGTTGCTGGTGGTCGAAGTGGATTAGCTCCATTTGGTTCTGGTTATGGTATGAGTGTAAATTTCGAGCCTGGATTGAACCCTGAATTTGGGGGAAATGCAAATTTCAATAGTAATCTTGGCTATGGCCGAGGATTAAATCCTTATTATATTGACAGTTCAAATAGGTTTGGCAGTCCTATCAGATATGATGGTGGTAATGGTGGAAGTAATTCTTTCTTCAGCTCTGTGAGTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTACGGAACAAGCTCTGCTAATTCCAGTGCATACATTGGATCAGGGAGTGGGAGAGTTGAAAGAAACACATTTGGCAATACTGGAGTCAGCTGGGGTTCTTCATCAATTTCTGTTCAGGGGGGGAACAATGTATCACAAAGTAATGGCAACCTTGGCTTTGGAGGCGCCAACAACAATTATGGTTTGGGGACTGGAGGGTCCAGAAGAAGCAGTGGTACCGACATGGCCCCAATATCATCATACTCTGTGTCAAATAGTGGACTTGATGGGACATTATCTGACTTATACAATAGCAGTTCAGTTTATGGTGACCCCACTTGGCAATCTTCAAATTCTGAGCGAGATGGATCTGGTCCCTTTGGTTTTGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAAAGTTCTCCAGGTTATGTTGGAGGTTATGCAGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1428 0.4202 MQADNGKLFIGGISWDTNEERLKEYFSTYGEVMESVIMKDRTTGRARGFGFIVFSDPTVAERVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSSSVHGSPGPCRTRKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDTVLLKTFHELNGKMVEVKRAVPKELSPGPNNSPLPGYNNYGLSRVSSFLNGFTQGYTPSNVGLQVDGRFSPVAGGRSGLAPFGSGYGMSVNFEPGLNPEFGGNANFNSNLGYGRGLNPYYIDSSNRFGSPIRYDGGNGGSNSFFSSVSRNLWGNGGLSYGTSSANSSAYIGSGSGRVERNTFGNTGVSWGSSSISVQGGNNVSQSNGNLGFGGANNNYGLGTGGSRRSSGTDMAPISSYSVSNSGLDGTLSDLYNSSSVYGDPTWQSSNSERDGSGPFGFGLGGAASDVSAKSSPGYVGGYAVNKRQPNRGIAT. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01035 475 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca5g01035 475 SUPERFAMILY RNA-binding domain, RBD 103 206 IPR035979 GO:0003676
Seca5g01035 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Seca5g01035 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Seca5g01035 475 Gene3D - 103 189 IPR012677 -
Seca5g01035 475 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 471 - -
Seca5g01035 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca5g01035 475 CDD RRM2_Hrp1p 107 184 - -
Seca5g01035 475 Gene3D - 4 88 IPR012677 -
Seca5g01035 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Seca5g01035 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Seca5g01035 475 SMART rrm1_1 7 78 IPR000504 GO:0003723
Seca5g01035 475 SMART rrm1_1 107 179 IPR000504 GO:0003723
Seca5g01035 475 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Seca5g01035 475 MobiDBLite consensus disorder prediction 422 475 - -
Seca5g01035 475 SUPERFAMILY RNA-binding domain, RBD 4 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01035 Seca-Chr5 30691866 30698922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01035 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.000 6.01e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01035 K14411 - gmx:100795907 787.334