Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01028 TTACACTACTCTTATTTAACACACATAGCATCGAAGATCGTGCCAAGAAGGAACAAAACAAAAAAGCACGATCCGTTACTAGTTGGTGACGTGTACACTGTTCAACAGGCTGAACCGGTTACGACTGGCGTTGAAAAACATTGGGCTGCTTTACTTCATCCTCCGTTGTCTTCTGTTCTGTGTGTTTTCCTCTTTCGCAGCTCAAAGCCCTATTGTCGTCATCGTTCAGATTCATTGCAGCAAATACTTAGAGTGCATTTCAGGAGTATTGTAAAGATTAGACTTGTGTACAATTCAGTTCCAATCCTTAAATACATCATCTTCGTCAACCAGGAGTCTTCTCCAAAAATGCTTCCTATGCGTCAGAAATCGCAGGTTGGAGGACTACAGACATCACTATCTCTAGTTTCTTCAGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCAACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTGATGCAACCGCGGCAAAGAAGATGGAGAATGGGAAAGCAGAGATTAATTGCCTTGAGAAGTCAGTTATTCATCGTGTTTCTAGTGCAGACAAAATTACTCTTCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAGAAAATTCATCACCTTCCCGAGGAGTTTCTAGATGAGATGAAAAATGGTCTTCGAGTTATCCTTGAGGGTGGAAATGGTTCACAACATAGGGAGGAGTTTTTCATTTTGCAGAAGCTTGTGCAGAGTAGAACTGATTTAACACCCAAGACACTGATTAGAGCACATCGTGCGCAGCTTGAAATTCTTGTTGCAATCAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGGTTGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAGCCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACAGTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGCTCTCATTGGACTCACACAGATTGTGCCATCCGTGAGCAACTTATTTGCACGGGCCCTTCTGTGAAGAGTGGAGCAGGACCAAGTGACATGGTTTTTAGGTGTCAAGCATGCAATAGGACATCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCATCTTGGGAAGGAGAGGCCTTCATGAGAGAACTGGATTATGTAAGTAGGATCTTTCATGATAGTAAAGACCCTCGAGGGAGGAAACTACTTTGGAAATGTGATGATCTCAAGGAAAAATTGAAAAGTAGAAAAATGGACTCAAAGGCTGCTTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGGGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCACCACTGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGTGAACTAGCAGACAAAGCCAGGGAAGTGACAGAACTCAAGATGGAGAGGCAGAAAAAGAAGTTGCAGATAGAAGAACTTGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTAAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCACTTGCAAAACAAGACAAATCAGAGGAAGAATTCACTAGCAATTACCTGAAACAACGATTAAGTGAGGCTGAGGCTGAGAAGCAATACCTGTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTTTCACAGAGCAGTGGTGGTAGTGGTGACCCCTCTCAAATGCTGATGTATTCAAAAATTCATGATCTGCTGTATAGTGTTCCTTCCAAGGCAGACGGCCAGCCTAATTTACGCCACCCGTTCCGGACAAATCCGTAA 2055 0.4311 LHYSYLTHIASKIVPRRNKTKKHDPLLVGDVYTVQQAEPVTTGVEKHWAALLHPPLSSVLCVFLFRSSKPYCRHRSDSLQQILRVHFRSIVKIRLVYNSVPILKYIIFVNQESSPKMLPMRQKSQVGGLQTSLSLVSSDPHLSPDEPRSNSDNLRESPTESASSQETWPTADATAAKKMENGKAEINCLEKSVIHRVSSADKITLQDIARESVDIICEKIHHLPEEFLDEMKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTPKTLIRAHRAQLEILVAINTGIQGFLHPSISLSQTSLVEIFGYKRCRNIACQSQLPADDCTCEICTNSNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSVKSGAGPSDMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEAFMRELDYVSRIFHDSKDPRGRKLLWKCDDLKEKLKSRKMDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPLDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSGGSGDPSQMLMYSKIHDLLYSVPSKADGQPNLRHPFRTNP. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01028 684 CDD PHD_OBE1_like 341 400 IPR047578 -
Seca5g01028 684 MobiDBLite consensus disorder prediction 136 171 - -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 564 584 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 302 323 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 261 276 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 276 291 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 348 368 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 219 241 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 603 625 IPR004082 -
Seca5g01028 684 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 421 440 IPR004082 -
Seca5g01028 684 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 134 665 IPR004082 -
Seca5g01028 684 SMART PHD_3 341 401 IPR001965 -
Seca5g01028 684 PIRSF UCP025218 109 670 - -
Seca5g01028 684 Pfam PHD - plant homeodomain finger protein 311 434 IPR032881 -
Seca5g01028 684 MobiDBLite consensus disorder prediction 154 171 - -
Seca5g01028 684 Pfam Coiled-coil region of Oberon 529 663 IPR032535 -
Seca5g01028 684 Coils Coil 535 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01028 Seca-Chr5 30269921 30273614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01028 311 413 PHD Gene Family AT5G57380 32.075 1.21e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01028 - - gmx:100781890 1029.24