Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01024 ATGGACAAAGTGTGTGAGCCGAAGTGGCTTGAGAATTTTCTCAGCAAAACATTTTTTGACACATGTGCAACTCATTGTTTACATAGAAATGAGTTAAGCCAATACTGTATAAATTGTAATCTGGCAGTTTGCAAACACTGTTCATCATCAGAAACTCACCACCAGCACCAGATACTGAAAATTTATAGATACAGTTCCAAGGAGGCTGTCCCCCTTGATGCTATGCAAAAGCACATTGACTGCTCACAAATTCAGCTCTTCATATGCAATACAAAATGGGTTATTTCTTTGAAGCCTCTTCCACACAAAGGTTTAGAAAAAGCGAATGAGAATTCATCATGCGAAATTTGTAGTAGAAGGCTGGTTGGGTCTGATTCATATCGTTATTGCTCCATTACTTGCAAGGTATTTTCTAACTATTTTGTACAAAATTCTCAGGTTGAAGCTGTTTTAAGGAAGCCTGATGATTCGGCTGCTCCTTTCATTTCCCTCCAGAGTCTTTGTCAGATAAAAAGGGAGGAAATTGCTGAACCCCCGAAGCGGCGTAACAAAAGAAAGGGAACACCCTGTAGAGCTCCTCTGTTCTAA 588 0.398 MDKVCEPKWLENFLSKTFFDTCATHCLHRNELSQYCINCNLAVCKHCSSSETHHQHQILKIYRYSSKEAVPLDAMQKHIDCSQIQLFICNTKWVISLKPLPHKGLEKANENSSCEICSRRLVGSDSYRYCSITCKVFSNYFVQNSQVEAVLRKPDDSAAPFISLQSLCQIKREEIAEPPKRRNKRKGTPCRAPLF. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01024 195 SUPERFAMILY B-box zinc-binding domain 19 62 - -
Seca5g01024 195 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 194 - -
Seca5g01024 195 Pfam PLATZ transcription factor 63 136 IPR006734 -
Seca5g01024 195 ProSiteProfiles Zinc finger B-box type profile. 22 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01024 Seca-Chr5 30211457 30212887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca5g01024 PLATZ 4.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01024 - - rcu:8280450 191.045