Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01022 ATGGAGAAAGTGCCTGAGATTGAAGAAATTGCTGAGCCACCAGCTTTACCTCCACCACCTCCTGATGTGCTGCCTAATATGGAAACAGAACAAATGGCTCCTACAAAGTATTCTATTATCAGTAGGCTGGGGGTTGGGACCACAGGAAAATGCATACCTTTGCTTGCCAATCTTTTCAAAGTTGCTTCTAATGCTCCTGATGCAATTTTTTTCCAGTATAGTGTTACTATTACTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGTCATTAGGAGAAAAGTGATTGAATGGCTTTATCAAATGTACTCTTCTGAACTTGGTGGTAAAAGGTTTGCATATGATGGAGAGAAAACTTTGTACACAGTGGGTCCTCTGCCACAAAATAAATTTGAGCACAAAATATTGCTTGAGGAATCATTTGCAAAGTGTAGTGCTGAGAACCCTGGTGCTAATGGAAGCCCTCGCGAGGAAACTAAAAGGTTAAAACGTTCTTTTCAGTCAAAGGCATTCATGGTGGAGATAAGTTTTGCTACTAAAATACCCCTGCAGTCTGTTGCTCTTTCCCTCAAAGGGATTGAGTTAGATGCCAATTGTCAGGATGCTTTGAGAGTGCTTGATATTGTACTGAGGCAGCGAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTCTTTCATGATGACTCGAGTAATTTCACTGATATTGGAGGTGGAGTAACAGGAGTTCAGGGTTTACATTCCAGTTTTCGCCTTACAGAGGGAGGATTGTCTCTCAATATGGATGTGTCCACAACGGTGATCTTAAAACCTGGACCCGTAATTGATTTTCTCCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCGAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCTTGCAACACATCGTAACCGGGAATTTAAAATTTCTGGCTTGAGCGAGAAACCCTGCATTCAGCAACTTTTTAGTATGAAGGTGAAAAGTGGAAACAACAACAGTGGAGAGCAGACAGTGGATATTACTGTATATGAGTATTTTGCTAAACACTGTGGCATAGATCTGACCTCTTCTGCTTATCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCAACTATCTGCCCTTGGAGCTTTGTTCACTTGTTTCCCTCCAGCGCTACACCAAGGCATTATCTCCAATGCAAAGAGCATCTTTAATGGAAAAATCACGCCAAAAACCACAGGATAGAATAAAAATTCTGACAAATGCTGTAGGAAATTATTGCTACGATGATGACCCTGTTCTTGGTGCATGTGGCATTTCTGTTGATAAGCAATTGACTCCGGTTGAAGGTCGGGTTCTTGAGACACCAAAGTTGAAGATTGGCAAGAATGAGGACTGTTTTCCCCATAATGGAAGGTGGAGCTTTAATAAAAAGACACTCCTTCAACCATCACACATTGATTTTTGGGCTGTTGTCAACTTTTCTGCACCTTGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGACCATATACTTTAATAGAGGAAGAATCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTTATATCAAAACTTACTAAAGAACCAAAGTTGATTCTCTGTGTCTTGCCAGAGAGGAAAAATTGTGACATTTACGGGCCTTGGAAAAAGAAGTGTCTGAGTGAATTTGGTGTTGTCACACAGTGTATTTCCCCTCTCAAGGTCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTGGGAGGTATAAATTCTCTGCTGACAATAGAGCATTCTGGGAAACTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTTTCTCATGGTTCCCCTGGTCAGTCACATATTCCATCAATAGCAGCGGTTGTCGGATCTCGGCGTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTGAGAACACAATCATCCAAGGTGGAGATAATTAATGCTCTATACAAGCCTTTGGAGAATGGGAATGATGATGGTATTATCAGAGAATTGCTTCTAGATTTTTATGATTCAAGTAATGGACGCAAACCAACTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAAACAGGTTTTGAATATTGAGCTTAACCAGATAATAAAGGTTACTGTGCGACCCTTTCATTGTTCAATTTGA 2262 0.4063 MEKVPEIEEIAEPPALPPPPPDVLPNMETEQMAPTKYSIISRLGVGTTGKCIPLLANLFKVASNAPDAIFFQYSVTITSEDKRTVESKVIRRKVIEWLYQMYSSELGGKRFAYDGEKTLYTVGPLPQNKFEHKILLEESFAKCSAENPGANGSPREETKRLKRSFQSKAFMVEISFATKIPLQSVALSLKGIELDANCQDALRVLDIVLRQRAANRGCLLVRQSFFHDDSSNFTDIGGGVTGVQGLHSSFRLTEGGLSLNMDVSTTVILKPGPVIDFLLSNQNVREPRYIDWAKAKKVLKNLRVLATHRNREFKISGLSEKPCIQQLFSMKVKSGNNNSGEQTVDITVYEYFAKHCGIDLTSSAYLPCLDVGKPNRPNYLPLELCSLVSLQRYTKALSPMQRASLMEKSRQKPQDRIKILTNAVGNYCYDDDPVLGACGISVDKQLTPVEGRVLETPKLKIGKNEDCFPHNGRWSFNKKTLLQPSHIDFWAVVNFSAPCDTSYITRELIKCGMSKGINIERPYTLIEEESQLRKSNPVARVEKMFDLLISKLTKEPKLILCVLPERKNCDIYGPWKKKCLSEFGVVTQCISPLKVTDQYLTNVLLKINSKLGGINSLLTIEHSGKLPLIKDTPTMILGMDVSHGSPGQSHIPSIAAVVGSRRWPLISRYRASVRTQSSKVEIINALYKPLENGNDDGIIRELLLDFYDSSNGRKPTQIIVFRDGVSESQFKQVLNIELNQIIKVTVRPFHCSI. 754
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01022 753 SMART DUF1785_2 219 271 IPR014811 -
Seca5g01022 753 ProSiteProfiles PAZ domain profile. 296 389 IPR003100 GO:0005515
Seca5g01022 753 Pfam Piwi domain 558 744 IPR003165 GO:0003676
Seca5g01022 753 Pfam Argonaute linker 2 domain 416 460 IPR032472 -
Seca5g01022 753 Gene3D - 625 747 IPR036397 GO:0003676
Seca5g01022 753 SUPERFAMILY Ribonuclease H-like 550 744 IPR012337 -
Seca5g01022 753 SUPERFAMILY PAZ domain 266 429 IPR036085 GO:0005515
Seca5g01022 753 Pfam N-terminal domain of argonaute 52 209 IPR032474 -
Seca5g01022 753 ProSiteProfiles Piwi domain profile. 558 743 IPR003165 GO:0003676
Seca5g01022 753 Pfam Argonaute linker 1 domain 221 268 IPR014811 -
Seca5g01022 753 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 34 743 - -
Seca5g01022 753 CDD PAZ_argonaute_like 271 388 - -
Seca5g01022 753 FunFam Protein argonaute 7 266 393 - -
Seca5g01022 753 Gene3D paz domain 265 393 - -
Seca5g01022 753 SMART Piwi_a_2 558 753 IPR003165 GO:0003676
Seca5g01022 753 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g01022 753 Gene3D - 453 619 - -
Seca5g01022 753 SMART PAZ_2_a_3 272 411 IPR003100 GO:0005515
Seca5g01022 753 Pfam PAZ domain 275 405 IPR003100 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca5g01022 Seca-Chr5 30184014 30204174 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01022 19 744 Eukaryotic Initiation Factors Gene Family AT1G48410 34.987 7.40e-113 365
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01022 K11593 - gmx:100778875 1188.33