Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01009 ATGAATTACATACACAGTGACAGGATATATGATTTTGTCTTTTACGTGTCATTTTCTGATTATATCTTTAAGGTAGCATGCTTACTATATTTCTCTATGGAACCTCTGAGTCTCATACATGGGCAAATACTCGCTGAAGACCAAAAGGAGGGAAAATCTACATTATCACCTGAGACTATGTTGAAATACATGGATAAACTTCCATACTATGCAAGGAATCAAATGGTTGATCAGACCAGAAAGAGCATGGCAGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGTGGTTCTCTGCCTATATGAAGCTGGAAAATATAGCAGAGTGCGACTGCTGGATTTGTTCTGTGAAGCACTCGATCAAGATTTGTACCCATCTAGGGATTCTGGTTATCATGTGGGGGATGAAAAAGATCATGGGTTGTCCATGAGAGATGATCCCTGTCAACAATATTCCACCATGCAAAGCGGCGGTTTTGTTTGCCAGATAGTACGCAAAGTGAGGGATCTCCCTACAGGAATGCTATATCAGTTGATTGAGAGTTGGGAAAAACTTACTGCAGATATTCCAGAGATTCATCAGAAACTGAAAATGTTGCAATCTTCAGTAAGATGTGAAGATGGAAAGAGTTCACGCAAGAGTTCGAAGGACATTTCCAAGAGATATTCATCCAGGGTTTCAGTAAACATTGACAAGGACTCGTCGAGAGGGTTAAACTCACAAGCTATCACATTTCTTGATTGTTTGATTAGAAATTTCTTTAGGCCCATTGAAGGAATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGGATTCAAGTTGATCTCTTGGAGTTCCATAAGATTTTAAGGTGCAGTTGCTGTAACAAGAGTGGCAATGCCCTATTGCCATCCAGGCATGATTCCTCAATTATGTATTCCCTAGCTCAAGAGCATGGAGATCTTATCAATCTTCATGACTGGTTCCAATCTTTTAGAACAATTGTTCTTCAACATACAAATAAACGGAAACAAAAATCAAAGCAGTCCCCGTTACCAAAGAAGAGAAAAGACATGAATGGATCTGATGACCAAAATGAAGCATCAATTCAAGCACGCTTTTGCAAGGCAGTTACGGAGCTGCAGATCACAGGGTTAGTTAGAATGCCCAGCAAGACGCCCAGATTTTGTACAAAGAGTTGCATTTGGACTTTGAATACACGATTCAATGGTTTATGA 1272 0.3986 MNYIHSDRIYDFVFYVSFSDYIFKVACLLYFSMEPLSLIHGQILAEDQKEGKSTLSPETMLKYMDKLPYYARNQMVDQTRKSMAEGLSELVTVQKLWSTVVLCLYEAGKYSRVRLLDLFCEALDQDLYPSRDSGYHVGDEKDHGLSMRDDPCQQYSTMQSGGFVCQIVRKVRDLPTGMLYQLIESWEKLTADIPEIHQKLKMLQSSVRCEDGKSSRKSSKDISKRYSSRVSVNIDKDSSRGLNSQAITFLDCLIRNFFRPIEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCSCCNKSGNALLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQHTNKRKQKSKQSPLPKKRKDMNGSDDQNEASIQARFCKAVTELQITGLVRMPSKTPRFCTKSCIWTLNTRFNGL. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01009 423 CDD Orc3 252 403 - -
Seca5g01009 423 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 23 412 IPR020795 GO:0003677|GO:0005664|GO:0006260
Seca5g01009 423 MobiDBLite consensus disorder prediction 351 375 - -
Seca5g01009 423 Pfam Origin recognition complex winged helix C-terminal 287 403 IPR040855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01009 Seca-Chr5 29686725 29704636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01009 23 348 Core DNA Replication Machinery Family AT5G16690 40.303 5.10e-78 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01009 K02605 - gmx:100780646 601.282