Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00999 ATGGCCTTCACAGTTACTAGCTCGACTTTTGAAGCTCCAGAACAACATGGAGACAATGCAATAGGAGATGTTGGATCCTTGGTTCTGGTCAAGGAAAAACTTTTGAGGAATAGGATGAATCTACAATGTCAAATTTCAAAGGTCATGACAATAATATCAACAAGGGACTCATTACAGACCAATGAAAATACTATTCAAATGCTTTCTTCTAAAATTGACAACCCTTTATGTATGTTTGGTGGTATATCTCAAGGTTTGGGAGAGAATGAATGCATAAATACTCGAAACATAACATTTTCAACAAGCATCAAGATTCCTTATATAGAAAGACTACCACCATTCACATTTTCGATACATTTGACCAGGAATCAACAAATAATAGCACGTCAGTCGATTATTGGAAAAAAGCAAATACATTATGATAAACATGATGGCGAGACACTTATATACATTGATAGCGATAAGGAATTGACAAAGTCTGACGATGTTAGACGTGACTTTAGTGTGGCTGAAGATCAAATTTTGTGGATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTGAATATAGTTTCAAAGTTTGTCAATGGTATTGTTTTAGAAATTCAGGAGAGGTATAAATTTCTCAAGGAAAAGTATACGAGGAGTTTGGACCAATATTCTAAAGATTTTGAAGAACCTGAATCTCTTATTGGCATATCATTGGATAAAAGCTTGAATGATGCTTTGGCTACTTTTGATAGCCTTTTCTGCCGACAGTGCCTTTGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCATGTTGTGATAATTGTTACCTTCTGAAACCTCTGGAAGCGCAAGTCGATAGGGAGCTAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATCTGAAGGGACTAGAAATATTTGGGAGGAGCAGTTGCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGCCGGAGAAGTGTCAGTGCCTGATAGTTCAATCATGAACAAAAATGGACAAATTGATGCAGAGTGTGAAGACCGAGAGATAGCATCAGAGTCACGGGTACGACGAAAATCACACAAAATTATGAAGTTTAAATATTCATCCAAGTCCGCTGGCCTCTCATCTACATGGAAAGGAATTACTGTTGGGAAATGTGAAACTTACAAGCAGTATACACCTTGTGGATGTCAGGAAATGTGTGGGAAGCAATGTACTTGTCTTCATAATGGATCTTGTTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCAAAAATCGGTTTAGAGGATGTTATTGTGCTATAAGTCAATGTAGAAGTCAACAGTGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATGTATGTCGAAATTGTTGGGTTAGTTGTGGTAGTGGTTCATTAGGAGAGCCACCTCGCCATGGAGATGGCCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAATCCAGCTAACAAAGATGATTACTTGGGAGAGTTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTCTCTATAATAGTAATGGTAAGGTATAATATGCAGGGAAATCAAACTGATGGCGTACTTACTATCTTAAATCTACTATTAATTTTTTCAAAGTATGTTCTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGTTAACCACTCAGAAAAACCCAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGGATTGAAGCTGGCGAGGAGCTTTTCTATGATTATTGCTACAGTCCAGAGCAAGCACCAACATGGTTTTAA 1995 0.385 MAFTVTSSTFEAPEQHGDNAIGDVGSLVLVKEKLLRNRMNLQCQISKVMTIISTRDSLQTNENTIQMLSSKIDNPLCMFGGISQGLGENECINTRNITFSTSIKIPYIERLPPFTFSIHLTRNQQIIARQSIIGKKQIHYDKHDGETLIYIDSDKELTKSDDVRRDFSVAEDQILWMAFEEHGFTEEVLNIVSKFVNGIVLEIQERYKFLKEKYTRSLDQYSKDFEEPESLIGISLDKSLNDALATFDSLFCRQCLCEKQKVWSEPEGDRKPCCDNCYLLKPLEAQVDRELSFSNWKPLEKDLYLKGLEIFGRSSCLIARNLLSSLKTCMEVASYMYAGEVSVPDSSIMNKNGQIDAECEDREIASESRVRRKSHKIMKFKYSSKSAGLSSTWKGITVGKCETYKQYTPCGCQEMCGKQCTCLHNGSCCEKYCGCSKLCKNRFRGCYCAISQCRSQQCPCFAAERECDPDVCRNCWVSCGSGSLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANKDDYLGEFTGELISHLEAEKRGKMYDRANSSFLFNLNDQASVSIIVMVRYNMQGNQTDGVLTILNLLLIFSKYVLDAYRKGDKLKFVNHSEKPNCYARIMLVGGDHRVGIFAKERIEAGEELFYDYCYSPEQAPTWF. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00999 664 Pfam CXC domain 445 476 IPR041355 -
Seca5g00999 664 SUPERFAMILY SET domain 406 657 IPR046341 -
Seca5g00999 664 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 291 569 IPR045318 GO:0006338|GO:0042054
Seca5g00999 664 Pfam SET domain 517 653 IPR001214 GO:0005515
Seca5g00999 664 CDD SET_EZH 506 655 - -
Seca5g00999 664 Gene3D SET domain 407 656 IPR046341 -
Seca5g00999 664 SMART CXC_2 441 478 IPR033467 -
Seca5g00999 664 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 27 664 IPR025778 GO:0031519
Seca5g00999 664 ProSiteProfiles CXC domain profile. 393 492 IPR026489 -
Seca5g00999 664 ProSiteProfiles SET domain profile. 506 654 IPR001214 GO:0005515
Seca5g00999 664 SMART set_7 506 660 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00999 Seca-Chr5 29404803 29409881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00999 495 657 C2H2 Transcription Factor Family AT2G23740 23.952 1.60e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g00999 SET 6.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00999 - K11430 cam:101494145 711.064